miRNA display CGI


Results 21 - 40 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3581 3' -56.8 NC_001650.1 + 172859 1.04 0.005961
Target:  5'- gCUAAGGGGgACUGCCCACUCAACCCCa -3'
miRNA:   3'- -GAUUCCCCgUGACGGGUGAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 172780 0.72 0.624983
Target:  5'- ---cGGGGCuuuAUUGCCCAa--GGCCCCg -3'
miRNA:   3'- gauuCCCCG---UGACGGGUgagUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 172735 0.92 0.037847
Target:  5'- cCUAGGGGGC-CUGCCCACUCuACCCUa -3'
miRNA:   3'- -GAUUCCCCGuGACGGGUGAGuUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 172653 0.66 0.905442
Target:  5'- gUGAGuGGGCAgUcCCC-CUUAGCuCCCa -3'
miRNA:   3'- gAUUC-CCCGUgAcGGGuGAGUUG-GGG- -5'
3581 3' -56.8 NC_001650.1 + 172573 0.7 0.734481
Target:  5'- --uGGGGGCua--CCCACUaAGCCCCg -3'
miRNA:   3'- gauUCCCCGugacGGGUGAgUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 172546 0.8 0.236864
Target:  5'- uCUAAGGGG-GCcGCCCACUCuACCCUg -3'
miRNA:   3'- -GAUUCCCCgUGaCGGGUGAGuUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 172532 0.67 0.87919
Target:  5'- -aGAGuGGGCAg-GCCCcCUaGGCCCCc -3'
miRNA:   3'- gaUUC-CCCGUgaCGGGuGAgUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 171909 0.68 0.799444
Target:  5'- --uAGGGGCcCUGCCaggcauggggaACUCu-CCCCa -3'
miRNA:   3'- gauUCCCCGuGACGGg----------UGAGuuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 170915 0.66 0.911443
Target:  5'- ---uGGGGacuCUGUCCgugggcgaGCUCcGCCCCg -3'
miRNA:   3'- gauuCCCCgu-GACGGG--------UGAGuUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 170775 0.68 0.834343
Target:  5'- gUAGGGGGCuucCUaGCCCcCUaccagcauugcaacaGACCCCg -3'
miRNA:   3'- gAUUCCCCGu--GA-CGGGuGAg--------------UUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 170699 0.68 0.833525
Target:  5'- ---cGGGGCggaGCUcGCCCACggaCAGaguCCCCa -3'
miRNA:   3'- gauuCCCCG---UGA-CGGGUGa--GUU---GGGG- -5'
3581 3' -56.8 NC_001650.1 + 170569 0.66 0.911443
Target:  5'- gUAGGGGGCuaggaaGCCCcCUacuCCCCu -3'
miRNA:   3'- gAUUCCCCGuga---CGGGuGAguuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 169848 0.71 0.655229
Target:  5'- -gGAGGGGagggGCUGCuCCAUUaauggaCAGCCCCc -3'
miRNA:   3'- gaUUCCCCg---UGACG-GGUGA------GUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 169702 0.67 0.857246
Target:  5'- uUAGGGGGCGuCgcacaGCCCuuuaugggcACUCccccauGACCCCu -3'
miRNA:   3'- gAUUCCCCGU-Ga----CGGG---------UGAG------UUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 169627 0.76 0.405825
Target:  5'- --cAGGGGgGCUGUCCAUUaauggagCAGCCCCu -3'
miRNA:   3'- gauUCCCCgUGACGGGUGA-------GUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 167305 0.68 0.799444
Target:  5'- -gAGGGGGCgaggccggGCUGCCgCcCUCccccgGGCCCCc -3'
miRNA:   3'- gaUUCCCCG--------UGACGG-GuGAG-----UUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 165752 0.67 0.864766
Target:  5'- -cAAGuGcuGCAgCUGCCCGCUCAacaGCCCUc -3'
miRNA:   3'- gaUUC-Cc-CGU-GACGGGUGAGU---UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 165559 0.67 0.87919
Target:  5'- --uAGGGGCucGCcGCCUucuUUCAACCCg -3'
miRNA:   3'- gauUCCCCG--UGaCGGGu--GAGUUGGGg -5'
3581 3' -56.8 NC_001650.1 + 164668 0.7 0.734481
Target:  5'- ---cGGGGgACcGCggCGCUCAACCCCc -3'
miRNA:   3'- gauuCCCCgUGaCGg-GUGAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 159984 0.68 0.807336
Target:  5'- uCUcuGGGGcCACcuaguggccucuuUGCUC-CUCAACCCCc -3'
miRNA:   3'- -GAuuCCCC-GUG-------------ACGGGuGAGUUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.