miRNA display CGI


Results 21 - 40 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3581 3' -56.8 NC_001650.1 + 182126 0.73 0.544083
Target:  5'- -gAAGGGGgGa-GCCCGCugcggccUCAACCCCg -3'
miRNA:   3'- gaUUCCCCgUgaCGGGUG-------AGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 130153 0.74 0.47798
Target:  5'- --cAGGGGCG-UGCCCGCcaCAGCCUCg -3'
miRNA:   3'- gauUCCCCGUgACGGGUGa-GUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 172546 0.8 0.236864
Target:  5'- uCUAAGGGG-GCcGCCCACUCuACCCUg -3'
miRNA:   3'- -GAUUCCCCgUGaCGGGUGAGuUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 6375 1.12 0.001739
Target:  5'- gCUAAGGGGCACUGCCCACUCAACCCCa -3'
miRNA:   3'- -GAUUCCCCGUGACGGGUGAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 125117 0.71 0.675316
Target:  5'- uCUucGGaGGCGgUGCCCGCgUCucCCCCc -3'
miRNA:   3'- -GAuuCC-CCGUgACGGGUG-AGuuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 6495 0.71 0.63507
Target:  5'- -cAGGGGGagUUGCCCACU--ACCCCc -3'
miRNA:   3'- gaUUCCCCguGACGGGUGAguUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 132742 0.75 0.441512
Target:  5'- -cGGGGGGCGCgcguUGCCCAgguaaGACCCCu -3'
miRNA:   3'- gaUUCCCCGUG----ACGGGUgag--UUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 6539 1.12 0.001739
Target:  5'- gCUAAGGGGCACUGCCCACUCAACCCCa -3'
miRNA:   3'- -GAUUCCCCGUGACGGGUGAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 173202 0.71 0.63507
Target:  5'- -cAGGGGGagUUGCCCACU--ACCCCc -3'
miRNA:   3'- gaUUCCCCguGACGGGUGAguUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 173082 1.12 0.001739
Target:  5'- gCUAAGGGGCACUGCCCACUCAACCCCa -3'
miRNA:   3'- -GAUUCCCCGUGACGGGUGAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 112192 0.74 0.468721
Target:  5'- --cAGGGG-GCUGCCCAcCUUAACCUCc -3'
miRNA:   3'- gauUCCCCgUGACGGGU-GAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 15419 0.73 0.544083
Target:  5'- -gAAGGGGgGa-GCCCGCugcggccUCAACCCCg -3'
miRNA:   3'- gaUUCCCCgUgaCGGGUG-------AGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 27009 0.77 0.326085
Target:  5'- -gAAGGGGCGCgcggcucccccgGCCCGCUCcucaAACUCCg -3'
miRNA:   3'- gaUUCCCCGUGa-----------CGGGUGAG----UUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 5839 0.8 0.236864
Target:  5'- uCUAAGGGG-GCcGCCCACUCuACCCUg -3'
miRNA:   3'- -GAUUCCCCgUGaCGGGUGAGuUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 6028 0.92 0.037847
Target:  5'- cCUAGGGGGC-CUGCCCACUCuACCCUa -3'
miRNA:   3'- -GAUUCCCCGuGACGGGUGAGuUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 172859 1.04 0.005961
Target:  5'- gCUAAGGGGgACUGCCCACUCAACCCCa -3'
miRNA:   3'- -GAUUCCCCgUGACGGGUGAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 109476 0.7 0.724785
Target:  5'- ---cGGGGCGCccCCCACUaucgccACCCCg -3'
miRNA:   3'- gauuCCCCGUGacGGGUGAgu----UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 49863 0.7 0.685313
Target:  5'- -aGAGGGGCAagGCCCAC----CCCCa -3'
miRNA:   3'- gaUUCCCCGUgaCGGGUGaguuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 121799 0.71 0.665286
Target:  5'- ---cGaGGGCGCUGCCCuccgCcGCCCCc -3'
miRNA:   3'- gauuC-CCCGUGACGGGuga-GuUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 132078 0.71 0.63507
Target:  5'- -aGAGGGGCGCgaaCCCGuCU-GACCCCc -3'
miRNA:   3'- gaUUCCCCGUGac-GGGU-GAgUUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.