miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3582 5' -62.4 NC_001650.1 + 130174 0.66 0.672169
Target:  5'- gGCCCGcgccacgGGCgCCuccaGGGGCgUGCCCGc -3'
miRNA:   3'- -CGGGUa------CCG-GGuuacCCCCG-ACGGGU- -5'
3582 5' -62.4 NC_001650.1 + 24917 0.66 0.672169
Target:  5'- cCCCgcgGUGGCCUuuaggacccuGcgGGGGuccuGCUGCCCu -3'
miRNA:   3'- cGGG---UACCGGG----------UuaCCCC----CGACGGGu -5'
3582 5' -62.4 NC_001650.1 + 14704 0.66 0.672169
Target:  5'- uGUCCGggGGUCCAA-GGGGGUUGgCa- -3'
miRNA:   3'- -CGGGUa-CCGGGUUaCCCCCGACgGgu -5'
3582 5' -62.4 NC_001650.1 + 181411 0.66 0.672169
Target:  5'- uGUCCGggGGUCCAA-GGGGGUUGgCa- -3'
miRNA:   3'- -CGGGUa-CCGGGUUaCCCCCGACgGgu -5'
3582 5' -62.4 NC_001650.1 + 17132 0.66 0.671195
Target:  5'- aGCaaCAUGGCUgAcuguuuguggguuAUGGGGGCUuCCCAc -3'
miRNA:   3'- -CGg-GUACCGGgU-------------UACCCCCGAcGGGU- -5'
3582 5' -62.4 NC_001650.1 + 183839 0.66 0.671195
Target:  5'- aGCaaCAUGGCUgAcuguuuguggguuAUGGGGGCUuCCCAc -3'
miRNA:   3'- -CGg-GUACCGGgU-------------UACCCCCGAcGGGU- -5'
3582 5' -62.4 NC_001650.1 + 15436 0.66 0.662413
Target:  5'- uGUCCcgGucaCCCGGUgaaGGGGGgaGCCCGc -3'
miRNA:   3'- -CGGGuaCc--GGGUUA---CCCCCgaCGGGU- -5'
3582 5' -62.4 NC_001650.1 + 145392 0.66 0.662413
Target:  5'- cUCCAuggggaUGGCCgcGUGGGGGUgguaGCCCu -3'
miRNA:   3'- cGGGU------ACCGGguUACCCCCGa---CGGGu -5'
3582 5' -62.4 NC_001650.1 + 30452 0.66 0.662413
Target:  5'- gGCCUuucuggggcGGCUCAG-GGGGGuCUcGCCCAu -3'
miRNA:   3'- -CGGGua-------CCGGGUUaCCCCC-GA-CGGGU- -5'
3582 5' -62.4 NC_001650.1 + 31015 0.66 0.662413
Target:  5'- gGCC--UGGCUgGGgcgGGGGGC-GCCCu -3'
miRNA:   3'- -CGGguACCGGgUUa--CCCCCGaCGGGu -5'
3582 5' -62.4 NC_001650.1 + 52942 0.66 0.662413
Target:  5'- cGCCCGgaggGGCC----GGGGGUU-CCCAg -3'
miRNA:   3'- -CGGGUa---CCGGguuaCCCCCGAcGGGU- -5'
3582 5' -62.4 NC_001650.1 + 182143 0.66 0.662413
Target:  5'- uGUCCcgGucaCCCGGUgaaGGGGGgaGCCCGc -3'
miRNA:   3'- -CGGGuaCc--GGGUUA---CCCCCgaCGGGU- -5'
3582 5' -62.4 NC_001650.1 + 157061 0.66 0.661436
Target:  5'- uGCCCccgagagGUGGUucgauuCCAAUGgcGGGGCUGCugCCAg -3'
miRNA:   3'- -CGGG-------UACCG------GGUUAC--CCCCGACG--GGU- -5'
3582 5' -62.4 NC_001650.1 + 4224 0.66 0.652634
Target:  5'- cCCCAuuucUGG-CCAAUGGGGacuCUGUCCGu -3'
miRNA:   3'- cGGGU----ACCgGGUUACCCCc--GACGGGU- -5'
3582 5' -62.4 NC_001650.1 + 170931 0.66 0.652634
Target:  5'- cCCCAuuucUGG-CCAAUGGGGacuCUGUCCGu -3'
miRNA:   3'- cGGGU----ACCgGGUUACCCCc--GACGGGU- -5'
3582 5' -62.4 NC_001650.1 + 131093 0.66 0.64284
Target:  5'- cGCUCGUGGgUCuc-GGGGGCgcucuUGUCCAg -3'
miRNA:   3'- -CGGGUACCgGGuuaCCCCCG-----ACGGGU- -5'
3582 5' -62.4 NC_001650.1 + 65267 0.66 0.64284
Target:  5'- gGCCguCAUGGCCCGcaGGaGGGCcaGCUCGu -3'
miRNA:   3'- -CGG--GUACCGGGUuaCC-CCCGa-CGGGU- -5'
3582 5' -62.4 NC_001650.1 + 147499 0.66 0.64284
Target:  5'- aGCCCAgUGGCCCGucgccGUGGcGGcacGCUGCg-- -3'
miRNA:   3'- -CGGGU-ACCGGGU-----UACC-CC---CGACGggu -5'
3582 5' -62.4 NC_001650.1 + 41606 0.66 0.64284
Target:  5'- uGCCUuuccggGGCCCGGuUGGuGGGUgugugUGUCCAa -3'
miRNA:   3'- -CGGGua----CCGGGUU-ACC-CCCG-----ACGGGU- -5'
3582 5' -62.4 NC_001650.1 + 7227 0.66 0.633039
Target:  5'- uCCCAUa-CCCAAUGGGGGCucagguUGCUgGg -3'
miRNA:   3'- cGGGUAccGGGUUACCCCCG------ACGGgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.