miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3583 5' -62 NC_001650.1 + 22288 0.65 0.713455
Target:  5'- cGGGGccucggaGCUggACCUccucuacucggagGCggGCACCUUCGGCu -3'
miRNA:   3'- aCCCC-------CGA--UGGG-------------UGa-CGUGGGAGCCG- -5'
3583 5' -62 NC_001650.1 + 38326 0.66 0.705843
Target:  5'- gGGGGGCUGg--GCUGUacGCCCUCGu- -3'
miRNA:   3'- aCCCCCGAUgggUGACG--UGGGAGCcg -5'
3583 5' -62 NC_001650.1 + 173484 0.66 0.705843
Target:  5'- aUGGGGGCUuagggguacuGCCCACUcuacuccauGCcaaugaagGCCCU-GGUu -3'
miRNA:   3'- -ACCCCCGA----------UGGGUGA---------CG--------UGGGAgCCG- -5'
3583 5' -62 NC_001650.1 + 76728 0.66 0.705843
Target:  5'- aGGGGGCUGCgCUcgUGCAgCagggUGGCg -3'
miRNA:   3'- aCCCCCGAUG-GGugACGUgGga--GCCG- -5'
3583 5' -62 NC_001650.1 + 131822 0.66 0.705843
Target:  5'- cGGGuGGCcAgCagcaGCUGCGCCCacUGGCg -3'
miRNA:   3'- aCCC-CCGaUgGg---UGACGUGGGa-GCCG- -5'
3583 5' -62 NC_001650.1 + 183642 0.66 0.705843
Target:  5'- cUGGGGGCU-CCCuaccaauaugGCUGaCcCCCUCaugcgcacagggGGCu -3'
miRNA:   3'- -ACCCCCGAuGGG----------UGAC-GuGGGAG------------CCG- -5'
3583 5' -62 NC_001650.1 + 31457 0.66 0.696277
Target:  5'- gUGuGGGGCaGCgCuCUGUACgCgUCGGCg -3'
miRNA:   3'- -AC-CCCCGaUGgGuGACGUG-GgAGCCG- -5'
3583 5' -62 NC_001650.1 + 23410 0.66 0.696277
Target:  5'- gGGGGGCccgGCgUCGCUGCuguuguaggggACCCUggagGGCg -3'
miRNA:   3'- aCCCCCGa--UG-GGUGACG-----------UGGGAg---CCG- -5'
3583 5' -62 NC_001650.1 + 117333 0.66 0.696277
Target:  5'- cGGGGGCgacguCUCcaaGCUGCccccGCCCcUGGCc -3'
miRNA:   3'- aCCCCCGau---GGG---UGACG----UGGGaGCCG- -5'
3583 5' -62 NC_001650.1 + 92044 0.66 0.693397
Target:  5'- uUGGGGGCgggggugggGguCCCUCGGCc -3'
miRNA:   3'- -ACCCCCGauggguga-CguGGGAGCCG- -5'
3583 5' -62 NC_001650.1 + 136096 0.66 0.686662
Target:  5'- cGGGGGCgGCCUugUccaGC-CCCagGGUc -3'
miRNA:   3'- aCCCCCGaUGGGugA---CGuGGGagCCG- -5'
3583 5' -62 NC_001650.1 + 159613 0.66 0.680873
Target:  5'- cGGGGGCggugggcaagggggACCCAUgauuCCCUUGGa -3'
miRNA:   3'- aCCCCCGa-------------UGGGUGacguGGGAGCCg -5'
3583 5' -62 NC_001650.1 + 55097 0.66 0.677007
Target:  5'- cGGGGGCUcagaauCCCAC-GCcCCCUaaaaagccaGGUa -3'
miRNA:   3'- aCCCCCGAu-----GGGUGaCGuGGGAg--------CCG- -5'
3583 5' -62 NC_001650.1 + 80711 0.66 0.674103
Target:  5'- cGGGGaGCgacgGCgucuccaccaccugCCugUGCACCCUuuccugcgCGGCc -3'
miRNA:   3'- aCCCC-CGa---UG--------------GGugACGUGGGA--------GCCG- -5'
3583 5' -62 NC_001650.1 + 6945 0.66 0.673135
Target:  5'- aGGGGG-UGCUCACUgcauaugcaugaggGCauugggcaauaaaGCCCUUGGCc -3'
miRNA:   3'- aCCCCCgAUGGGUGA--------------CG-------------UGGGAGCCG- -5'
3583 5' -62 NC_001650.1 + 173652 0.66 0.673135
Target:  5'- aGGGGG-UGCUCACUgcauaugcaugaggGCauugggcaauaaaGCCCUUGGCc -3'
miRNA:   3'- aCCCCCgAUGGGUGA--------------CG-------------UGGGAGCCG- -5'
3583 5' -62 NC_001650.1 + 83545 0.66 0.667318
Target:  5'- -cGGGGC-GCCCcguuucagGCUG-GCCCUgGGCa -3'
miRNA:   3'- acCCCCGaUGGG--------UGACgUGGGAgCCG- -5'
3583 5' -62 NC_001650.1 + 13682 0.66 0.667318
Target:  5'- aGGGGGCgucUCCAUgaUGUACCC--GGCc -3'
miRNA:   3'- aCCCCCGau-GGGUG--ACGUGGGagCCG- -5'
3583 5' -62 NC_001650.1 + 180389 0.66 0.667318
Target:  5'- aGGGGGCgucUCCAUgaUGUACCC--GGCc -3'
miRNA:   3'- aCCCCCGau-GGGUG--ACGUGGGagCCG- -5'
3583 5' -62 NC_001650.1 + 66626 0.66 0.667318
Target:  5'- cGGcGGGCUccacggGCCCGCa-CACCCUCcuGCu -3'
miRNA:   3'- aCC-CCCGA------UGGGUGacGUGGGAGc-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.