miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3585 5' -60 NC_001650.1 + 129133 0.66 0.817348
Target:  5'- cGCGCccGGGGCCgAGgacacGGGGGcgGcCCu -3'
miRNA:   3'- -UGUGc-CCCCGGgUUa----CCCCCuaCaGG- -5'
3585 5' -60 NC_001650.1 + 93364 0.66 0.817348
Target:  5'- -gACGGGGGCggCCuuUGGGGcGcUGgCCa -3'
miRNA:   3'- ugUGCCCCCG--GGuuACCCC-CuACaGG- -5'
3585 5' -60 NC_001650.1 + 131340 0.66 0.817348
Target:  5'- cGCGgGuGGGGCCCGGccGGGGGcccUGUa- -3'
miRNA:   3'- -UGUgC-CCCCGGGUUa-CCCCCu--ACAgg -5'
3585 5' -60 NC_001650.1 + 58942 0.66 0.817348
Target:  5'- gGCGCGGGaGGCCCGGgagGcGGcGGcgGcUUCu -3'
miRNA:   3'- -UGUGCCC-CCGGGUUa--C-CC-CCuaC-AGG- -5'
3585 5' -60 NC_001650.1 + 166753 0.66 0.817348
Target:  5'- aACACGGGGGgCCAcaaaGGGcgG-CCg -3'
miRNA:   3'- -UGUGCCCCCgGGUuaccCCCuaCaGG- -5'
3585 5' -60 NC_001650.1 + 46 0.66 0.817348
Target:  5'- aACACGGGGGgCCAcaaaGGGcgG-CCg -3'
miRNA:   3'- -UGUGCCCCCgGGUuaccCCCuaCaGG- -5'
3585 5' -60 NC_001650.1 + 106959 0.66 0.817348
Target:  5'- cCugGGGGGCgCGGUcaccacGGaGGcGAUGUUCu -3'
miRNA:   3'- uGugCCCCCGgGUUA------CC-CC-CUACAGG- -5'
3585 5' -60 NC_001650.1 + 158662 0.66 0.816519
Target:  5'- cUACGGGGGUCCAgGUGGcuaaccugaccucGGGGg--CCa -3'
miRNA:   3'- uGUGCCCCCGGGU-UACC-------------CCCUacaGG- -5'
3585 5' -60 NC_001650.1 + 132316 0.66 0.808991
Target:  5'- --gUGGGcGGCCCGuagGGGuaGGggGUCCc -3'
miRNA:   3'- uguGCCC-CCGGGUua-CCC--CCuaCAGG- -5'
3585 5' -60 NC_001650.1 + 109262 0.66 0.808991
Target:  5'- cCGCGGGguGGCgaUAGUGGGGGgcGcCCc -3'
miRNA:   3'- uGUGCCC--CCGg-GUUACCCCCuaCaGG- -5'
3585 5' -60 NC_001650.1 + 107529 0.66 0.808991
Target:  5'- --cCGGGGGUCUccGUGGGGGAccUG-CUg -3'
miRNA:   3'- uguGCCCCCGGGu-UACCCCCU--ACaGG- -5'
3585 5' -60 NC_001650.1 + 173625 0.66 0.808147
Target:  5'- gGCAuUGGGcaauaaagcccuuGGCCCAAUGGGGGccGa-- -3'
miRNA:   3'- -UGU-GCCC-------------CCGGGUUACCCCCuaCagg -5'
3585 5' -60 NC_001650.1 + 6918 0.66 0.808147
Target:  5'- gGCAuUGGGcaauaaagcccuuGGCCCAAUGGGGGccGa-- -3'
miRNA:   3'- -UGU-GCCC-------------CCGGGUUACCCCCuaCagg -5'
3585 5' -60 NC_001650.1 + 8076 0.66 0.800487
Target:  5'- ---gGGGGGCUCAgaugcauaugcAUaGGGGGcgGUCg -3'
miRNA:   3'- ugugCCCCCGGGU-----------UA-CCCCCuaCAGg -5'
3585 5' -60 NC_001650.1 + 52614 0.66 0.800487
Target:  5'- -gAUGGGGGCCac-UGGcccGGGG-GUCCu -3'
miRNA:   3'- ugUGCCCCCGGguuACC---CCCUaCAGG- -5'
3585 5' -60 NC_001650.1 + 52727 0.66 0.800487
Target:  5'- ---aGGGGGCCaCGGUGGcGGucucccugaccAUGUCCc -3'
miRNA:   3'- ugugCCCCCGG-GUUACCcCC-----------UACAGG- -5'
3585 5' -60 NC_001650.1 + 77176 0.66 0.800487
Target:  5'- aACACGGaGGCCuCGggcacgggcAUGGGGGcgGUg- -3'
miRNA:   3'- -UGUGCCcCCGG-GU---------UACCCCCuaCAgg -5'
3585 5' -60 NC_001650.1 + 174783 0.66 0.800487
Target:  5'- ---gGGGGGCUCAgaugcauaugcAUaGGGGGcgGUCg -3'
miRNA:   3'- ugugCCCCCGGGU-----------UA-CCCCCuaCAGg -5'
3585 5' -60 NC_001650.1 + 106857 0.66 0.797908
Target:  5'- cGCugGGGucgGGCCCg--GGGuGGAUGacaggucuaucaucUCCa -3'
miRNA:   3'- -UGugCCC---CCGGGuuaCCC-CCUAC--------------AGG- -5'
3585 5' -60 NC_001650.1 + 63714 0.66 0.795317
Target:  5'- cACGCGuGGaaGGCCUgcccgaggucuuuuaGGUGGGcGGAgGUCCa -3'
miRNA:   3'- -UGUGC-CC--CCGGG---------------UUACCC-CCUaCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.