miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3586 3' -58.7 NC_001650.1 + 173561 0.66 0.831076
Target:  5'- gCCCUgGUuGCUGGGCAGacuguGGGGGAc- -3'
miRNA:   3'- aGGGGgCAcCGACCCGUU-----CUCUCUau -5'
3586 3' -58.7 NC_001650.1 + 6854 0.66 0.831076
Target:  5'- gCCCUgGUuGCUGGGCAGacuguGGGGGAc- -3'
miRNA:   3'- aGGGGgCAcCGACCCGUU-----CUCUCUau -5'
3586 3' -58.7 NC_001650.1 + 90194 0.66 0.831076
Target:  5'- gCCCCC-UGGCggcggugGGgaaGCGGGAGAGGg- -3'
miRNA:   3'- aGGGGGcACCGa------CC---CGUUCUCUCUau -5'
3586 3' -58.7 NC_001650.1 + 131545 0.66 0.831076
Target:  5'- gCCgCCCGggGGCUGGacGCGGGgcGGAGAa- -3'
miRNA:   3'- aGG-GGGCa-CCGACC--CGUUC--UCUCUau -5'
3586 3' -58.7 NC_001650.1 + 146153 0.66 0.822776
Target:  5'- cUCgCCCGggccgGGCUgGGGCAcAGGGAGc-- -3'
miRNA:   3'- -AGgGGGCa----CCGA-CCCGU-UCUCUCuau -5'
3586 3' -58.7 NC_001650.1 + 136286 0.66 0.822776
Target:  5'- gCCCCCGccuucaUGGCggccgcgGGGCu-GGGGGAg- -3'
miRNA:   3'- aGGGGGC------ACCGa------CCCGuuCUCUCUau -5'
3586 3' -58.7 NC_001650.1 + 168881 0.66 0.822776
Target:  5'- cUCCCCauUGGCuaaaUGGGuCAGuGGGAGGUAc -3'
miRNA:   3'- -AGGGGgcACCG----ACCC-GUU-CUCUCUAU- -5'
3586 3' -58.7 NC_001650.1 + 2174 0.66 0.822776
Target:  5'- cUCCCCauUGGCuaaaUGGGuCAGuGGGAGGUAc -3'
miRNA:   3'- -AGGGGgcACCG----ACCC-GUU-CUCUCUAU- -5'
3586 3' -58.7 NC_001650.1 + 8001 0.66 0.814308
Target:  5'- aCCCCC-UGGuCUGccuGGCAaccAGAGAGAc- -3'
miRNA:   3'- aGGGGGcACC-GAC---CCGU---UCUCUCUau -5'
3586 3' -58.7 NC_001650.1 + 59285 0.66 0.814308
Target:  5'- cCCCCCGagauauggaGGCUGGuguacgacggcuGCAAG-GAGAUGg -3'
miRNA:   3'- aGGGGGCa--------CCGACC------------CGUUCuCUCUAU- -5'
3586 3' -58.7 NC_001650.1 + 174708 0.66 0.814308
Target:  5'- aCCCCC-UGGuCUGccuGGCAaccAGAGAGAc- -3'
miRNA:   3'- aGGGGGcACC-GAC---CCGU---UCUCUCUau -5'
3586 3' -58.7 NC_001650.1 + 132446 0.66 0.805681
Target:  5'- gCCgCC-UGGCUGGGgGAGAG-GAa- -3'
miRNA:   3'- aGGgGGcACCGACCCgUUCUCuCUau -5'
3586 3' -58.7 NC_001650.1 + 8544 0.66 0.805681
Target:  5'- aCCCCCGgGGUgguggGGGCuauGGGGGUGu -3'
miRNA:   3'- aGGGGGCaCCGa----CCCGuucUCUCUAU- -5'
3586 3' -58.7 NC_001650.1 + 175251 0.66 0.805681
Target:  5'- aCCCCCGgGGUgguggGGGCuauGGGGGUGu -3'
miRNA:   3'- aGGGGGCaCCGa----CCCGuucUCUCUAU- -5'
3586 3' -58.7 NC_001650.1 + 168538 0.66 0.796902
Target:  5'- aUCCCCUcucGGCcaaugGGGguAGGGGGGUGg -3'
miRNA:   3'- -AGGGGGca-CCGa----CCCguUCUCUCUAU- -5'
3586 3' -58.7 NC_001650.1 + 1831 0.66 0.796902
Target:  5'- aUCCCCUcucGGCcaaugGGGguAGGGGGGUGg -3'
miRNA:   3'- -AGGGGGca-CCGa----CCCguUCUCUCUAU- -5'
3586 3' -58.7 NC_001650.1 + 102532 0.66 0.78708
Target:  5'- gUCCCCCGggaucuGCUGGGCGGGucccauaaaguacAGAGc-- -3'
miRNA:   3'- -AGGGGGCac----CGACCCGUUC-------------UCUCuau -5'
3586 3' -58.7 NC_001650.1 + 75087 0.67 0.778921
Target:  5'- -aCCCCG-GGagcGGaGCGAGAGAGAa- -3'
miRNA:   3'- agGGGGCaCCga-CC-CGUUCUCUCUau -5'
3586 3' -58.7 NC_001650.1 + 162856 0.67 0.778921
Target:  5'- uUUCUCCGccauuGCUGGGCuuGGAGGGGUGc -3'
miRNA:   3'- -AGGGGGCac---CGACCCGu-UCUCUCUAU- -5'
3586 3' -58.7 NC_001650.1 + 131740 0.67 0.778008
Target:  5'- gCCCCCGggcGGCcacguugaccgcgUGGGCgAAGAGGGu-- -3'
miRNA:   3'- aGGGGGCa--CCG-------------ACCCG-UUCUCUCuau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.