miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3586 5' -64.6 NC_001650.1 + 38655 0.66 0.604376
Target:  5'- gGCGCCccCUCCCGguugcggagcGGCGGCGcCacaGCGg -3'
miRNA:   3'- gCGCGGc-GAGGGU----------CCGUCGCaGg--CGC- -5'
3586 5' -64.6 NC_001650.1 + 123058 0.66 0.594885
Target:  5'- uGgGCUGCUgC-AGGCucucuaugaaGGCGUCCGUGg -3'
miRNA:   3'- gCgCGGCGAgGgUCCG----------UCGCAGGCGC- -5'
3586 5' -64.6 NC_001650.1 + 172420 0.66 0.594885
Target:  5'- uGgGCCGCUCCUcccacaagauGGCAGCGcCCu-- -3'
miRNA:   3'- gCgCGGCGAGGGu---------CCGUCGCaGGcgc -5'
3586 5' -64.6 NC_001650.1 + 5713 0.66 0.594885
Target:  5'- uGgGCCGCUCCUcccacaagauGGCAGCGcCCu-- -3'
miRNA:   3'- gCgCGGCGAGGGu---------CCGUCGCaGGcgc -5'
3586 5' -64.6 NC_001650.1 + 68852 0.66 0.585417
Target:  5'- aCGUGCCGCgcCCCGGGCccauggCCGCc -3'
miRNA:   3'- -GCGCGGCGa-GGGUCCGucgca-GGCGc -5'
3586 5' -64.6 NC_001650.1 + 121422 0.66 0.585417
Target:  5'- gGCaCCGCUCCaggaAGGCcuccacCGUCCGCc -3'
miRNA:   3'- gCGcGGCGAGGg---UCCGuc----GCAGGCGc -5'
3586 5' -64.6 NC_001650.1 + 80258 0.66 0.575979
Target:  5'- aCGgGCUGCUgCUggAGGCGuGCGUCCcCGa -3'
miRNA:   3'- -GCgCGGCGAgGG--UCCGU-CGCAGGcGC- -5'
3586 5' -64.6 NC_001650.1 + 146468 0.66 0.575979
Target:  5'- -cCGCgGC-CCUAGGCGGCccgggcgCCGCGa -3'
miRNA:   3'- gcGCGgCGaGGGUCCGUCGca-----GGCGC- -5'
3586 5' -64.6 NC_001650.1 + 46371 0.66 0.575979
Target:  5'- gGCGCCGCaucggCCgCgGGGCAccagauGCG-CCGCGg -3'
miRNA:   3'- gCGCGGCGa----GG-G-UCCGU------CGCaGGCGC- -5'
3586 5' -64.6 NC_001650.1 + 109585 0.66 0.575979
Target:  5'- -aUGCCGgUUCCAGG-GGCccGUCCGCGu -3'
miRNA:   3'- gcGCGGCgAGGGUCCgUCG--CAGGCGC- -5'
3586 5' -64.6 NC_001650.1 + 143105 0.66 0.575979
Target:  5'- gCGCGCCgGCUgCaCGGGCcggGGCGgCgGCGg -3'
miRNA:   3'- -GCGCGG-CGAgG-GUCCG---UCGCaGgCGC- -5'
3586 5' -64.6 NC_001650.1 + 38440 0.66 0.575037
Target:  5'- gCGcCGCCGCUCCgCaaccgggAGGgGGCGcCUGUGa -3'
miRNA:   3'- -GC-GCGGCGAGG-G-------UCCgUCGCaGGCGC- -5'
3586 5' -64.6 NC_001650.1 + 165155 0.66 0.570332
Target:  5'- aCGCGCCGgaCCggggaGccggggugagagacuGGCGGCGgCCGCGg -3'
miRNA:   3'- -GCGCGGCgaGGg----U---------------CCGUCGCaGGCGC- -5'
3586 5' -64.6 NC_001650.1 + 60516 0.66 0.566575
Target:  5'- gGCGCCGgggUCCUGGGCAGaggCgGCGg -3'
miRNA:   3'- gCGCGGCg--AGGGUCCGUCgcaGgCGC- -5'
3586 5' -64.6 NC_001650.1 + 42852 0.66 0.566575
Target:  5'- uGCGUgGC-CCCGGGCAcGUGUgUCGCc -3'
miRNA:   3'- gCGCGgCGaGGGUCCGU-CGCA-GGCGc -5'
3586 5' -64.6 NC_001650.1 + 30885 0.66 0.566575
Target:  5'- -cCGCuCGC-CCCGcGGCGcgcGCGUCCGCc -3'
miRNA:   3'- gcGCG-GCGaGGGU-CCGU---CGCAGGCGc -5'
3586 5' -64.6 NC_001650.1 + 81628 0.66 0.557211
Target:  5'- gCGCGCCGCg--CGGGcCAGCucccccgucacGUUCGCGg -3'
miRNA:   3'- -GCGCGGCGaggGUCC-GUCG-----------CAGGCGC- -5'
3586 5' -64.6 NC_001650.1 + 136639 0.66 0.557211
Target:  5'- gGCGCCcugagGCUCCgCGGGCagagugccaGGCGagCCGCc -3'
miRNA:   3'- gCGCGG-----CGAGG-GUCCG---------UCGCa-GGCGc -5'
3586 5' -64.6 NC_001650.1 + 136827 0.66 0.557211
Target:  5'- gGCGCCccgacGCcCCCGGGCGGUGggCUGgGu -3'
miRNA:   3'- gCGCGG-----CGaGGGUCCGUCGCa-GGCgC- -5'
3586 5' -64.6 NC_001650.1 + 51065 0.67 0.547892
Target:  5'- uGCGCUGCgCCagcagaaaGGGCAGCucgCCGCc -3'
miRNA:   3'- gCGCGGCGaGGg-------UCCGUCGca-GGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.