miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3588 5' -52.5 NC_001650.1 + 155969 0.66 0.990404
Target:  5'- --gCCGUgcuguGCcUGCCCGGCUgCACCg -3'
miRNA:   3'- cagGGUAau---CGuAUGGGCUGGaGUGG- -5'
3588 5' -52.5 NC_001650.1 + 132127 0.66 0.990404
Target:  5'- -gCCCAc-AGCAggaaGCCCGcCCUgGCCc -3'
miRNA:   3'- caGGGUaaUCGUa---UGGGCuGGAgUGG- -5'
3588 5' -52.5 NC_001650.1 + 50328 0.66 0.990404
Target:  5'- cGUCCCucccGGC---CCCGGCCUCcucgaGCCc -3'
miRNA:   3'- -CAGGGuaa-UCGuauGGGCUGGAG-----UGG- -5'
3588 5' -52.5 NC_001650.1 + 20934 0.66 0.989084
Target:  5'- -gCCCAUggcGUGUACCCaaACCUCAgCa -3'
miRNA:   3'- caGGGUAau-CGUAUGGGc-UGGAGUgG- -5'
3588 5' -52.5 NC_001650.1 + 50192 0.66 0.989084
Target:  5'- cGUCCC---GGgAUACCCcauguGACCgacggCACCg -3'
miRNA:   3'- -CAGGGuaaUCgUAUGGG-----CUGGa----GUGG- -5'
3588 5' -52.5 NC_001650.1 + 60406 0.66 0.988662
Target:  5'- gGUCCCcgUGcugacccgccgcccGCAgacCCCGGCCUCcuCCc -3'
miRNA:   3'- -CAGGGuaAU--------------CGUau-GGGCUGGAGu-GG- -5'
3588 5' -52.5 NC_001650.1 + 172898 0.66 0.98778
Target:  5'- cUCCCAUUGGgccuuugggauaauUACCCGAggcCCUCAUg -3'
miRNA:   3'- cAGGGUAAUCgu------------AUGGGCU---GGAGUGg -5'
3588 5' -52.5 NC_001650.1 + 6191 0.66 0.98778
Target:  5'- cUCCCAUUGGgccuuugggauaauUACCCGAggcCCUCAUg -3'
miRNA:   3'- cAGGGUAAUCgu------------AUGGGCU---GGAGUGg -5'
3588 5' -52.5 NC_001650.1 + 46285 0.66 0.987628
Target:  5'- cUCUCAUUGGCcaa-CCGGCCcgUCACUc -3'
miRNA:   3'- cAGGGUAAUCGuaugGGCUGG--AGUGG- -5'
3588 5' -52.5 NC_001650.1 + 76413 0.66 0.987319
Target:  5'- cGUCCCAgggAGacgccccugcACUCGGCCUcCACCu -3'
miRNA:   3'- -CAGGGUaa-UCgua-------UGGGCUGGA-GUGG- -5'
3588 5' -52.5 NC_001650.1 + 167341 0.66 0.986685
Target:  5'- -cCCCAUUGGuCGgucucccccgaggucUGCCCGgagacgggugACCUCACUc -3'
miRNA:   3'- caGGGUAAUC-GU---------------AUGGGC----------UGGAGUGG- -5'
3588 5' -52.5 NC_001650.1 + 634 0.66 0.986685
Target:  5'- -cCCCAUUGGuCGgucucccccgaggucUGCCCGgagacgggugACCUCACUc -3'
miRNA:   3'- caGGGUAAUC-GU---------------AUGGGC----------UGGAGUGG- -5'
3588 5' -52.5 NC_001650.1 + 57046 0.66 0.986026
Target:  5'- -gCCCAgcaagGGUcu-CCCGGCgUCACCc -3'
miRNA:   3'- caGGGUaa---UCGuauGGGCUGgAGUGG- -5'
3588 5' -52.5 NC_001650.1 + 147877 0.66 0.986026
Target:  5'- -cCCCAg-AGCGgcuCCCGGCCgcgcuuccCACCg -3'
miRNA:   3'- caGGGUaaUCGUau-GGGCUGGa-------GUGG- -5'
3588 5' -52.5 NC_001650.1 + 155253 0.66 0.986026
Target:  5'- cGUCCCGUacgcccAGCAggggaggauguUACCCGccagguGCCUCAgCg -3'
miRNA:   3'- -CAGGGUAa-----UCGU-----------AUGGGC------UGGAGUgG- -5'
3588 5' -52.5 NC_001650.1 + 32322 0.66 0.986026
Target:  5'- cUgCCGUUcagGGUAUGCggGGCCUCGCCu -3'
miRNA:   3'- cAgGGUAA---UCGUAUGggCUGGAGUGG- -5'
3588 5' -52.5 NC_001650.1 + 8063 0.66 0.984269
Target:  5'- -cCCCAUUGGCc--CCCG-CCUaauuaACCa -3'
miRNA:   3'- caGGGUAAUCGuauGGGCuGGAg----UGG- -5'
3588 5' -52.5 NC_001650.1 + 174770 0.66 0.984269
Target:  5'- -cCCCAUUGGCc--CCCG-CCUaauuaACCa -3'
miRNA:   3'- caGGGUAAUCGuauGGGCuGGAg----UGG- -5'
3588 5' -52.5 NC_001650.1 + 82111 0.66 0.984269
Target:  5'- cGUCCCug-GGacucgcACCCGGCCUCGg- -3'
miRNA:   3'- -CAGGGuaaUCgua---UGGGCUGGAGUgg -5'
3588 5' -52.5 NC_001650.1 + 44614 0.66 0.984269
Target:  5'- uGUCCC--UGGCGUuguguccucACCC--CCUCACCc -3'
miRNA:   3'- -CAGGGuaAUCGUA---------UGGGcuGGAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.