miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3591 5' -54 NC_001650.1 + 81528 0.66 0.975619
Target:  5'- uCUUUGACAu--GGGCCgggaGGC-GCUCCa -3'
miRNA:   3'- -GAGACUGUuguCUUGGg---CCGuCGAGG- -5'
3591 5' -54 NC_001650.1 + 79196 0.66 0.975619
Target:  5'- aUCgGGCGcuGgAGGACCCGGgGGCUg- -3'
miRNA:   3'- gAGaCUGU--UgUCUUGGGCCgUCGAgg -5'
3591 5' -54 NC_001650.1 + 28500 0.66 0.975619
Target:  5'- uCUUUGACGu--GGACUCGGCcGC-CCg -3'
miRNA:   3'- -GAGACUGUuguCUUGGGCCGuCGaGG- -5'
3591 5' -54 NC_001650.1 + 102469 0.66 0.973
Target:  5'- gCUCUGcuGCAGCAccuGCgCCGGCuGCgCCg -3'
miRNA:   3'- -GAGAC--UGUUGUcu-UG-GGCCGuCGaGG- -5'
3591 5' -54 NC_001650.1 + 130474 0.66 0.973
Target:  5'- gUCUGGCugcACAGGACCUucaaGGCccuGCUgCCc -3'
miRNA:   3'- gAGACUGu--UGUCUUGGG----CCGu--CGA-GG- -5'
3591 5' -54 NC_001650.1 + 18497 0.66 0.973
Target:  5'- -aCUGGCAACAGAuCCUuuGGaaggGGUUCCc -3'
miRNA:   3'- gaGACUGUUGUCUuGGG--CCg---UCGAGG- -5'
3591 5' -54 NC_001650.1 + 73545 0.66 0.973
Target:  5'- --aUGGCgAACAGGuCCUGGCAGUggacgcccaugUCCg -3'
miRNA:   3'- gagACUG-UUGUCUuGGGCCGUCG-----------AGG- -5'
3591 5' -54 NC_001650.1 + 65880 0.66 0.970184
Target:  5'- ---aGACAGCuAGAGaCCGGCAGCa-- -3'
miRNA:   3'- gagaCUGUUG-UCUUgGGCCGUCGagg -5'
3591 5' -54 NC_001650.1 + 158775 0.66 0.970184
Target:  5'- --aUGACcaccAGCAGGuGCUCGGCGucGCUCCu -3'
miRNA:   3'- gagACUG----UUGUCU-UGGGCCGU--CGAGG- -5'
3591 5' -54 NC_001650.1 + 115883 0.66 0.967163
Target:  5'- uCUCUGcuuucACAGCGGcgaCUGGUGGCUCUc -3'
miRNA:   3'- -GAGAC-----UGUUGUCuugGGCCGUCGAGG- -5'
3591 5' -54 NC_001650.1 + 181687 0.66 0.967163
Target:  5'- -cCUGGCAACGcgcGGCCCGcGCGacGCUUCa -3'
miRNA:   3'- gaGACUGUUGUc--UUGGGC-CGU--CGAGG- -5'
3591 5' -54 NC_001650.1 + 14980 0.66 0.967163
Target:  5'- -cCUGGCAACGcgcGGCCCGcGCGacGCUUCa -3'
miRNA:   3'- gaGACUGUUGUc--UUGGGC-CGU--CGAGG- -5'
3591 5' -54 NC_001650.1 + 99679 0.67 0.960486
Target:  5'- -aCUGACAGCAacAACCaUGGCuGCUgCCg -3'
miRNA:   3'- gaGACUGUUGUc-UUGG-GCCGuCGA-GG- -5'
3591 5' -54 NC_001650.1 + 157550 0.67 0.960486
Target:  5'- aUCUGA-GACAGcGCCUccuguGGCAGCUUg -3'
miRNA:   3'- gAGACUgUUGUCuUGGG-----CCGUCGAGg -5'
3591 5' -54 NC_001650.1 + 108626 0.67 0.960486
Target:  5'- uCUCUGACAuccugGCcGAccACCCGGCcucGCgCCu -3'
miRNA:   3'- -GAGACUGU-----UGuCU--UGGGCCGu--CGaGG- -5'
3591 5' -54 NC_001650.1 + 41615 0.67 0.960486
Target:  5'- ---gGuuuCAGgGGGGCCCGcGUGGCUCCa -3'
miRNA:   3'- gagaCu--GUUgUCUUGGGC-CGUCGAGG- -5'
3591 5' -54 NC_001650.1 + 13844 0.67 0.960486
Target:  5'- gUCUGGCAGCGu--CCCccucagcaGGCAGCgCCu -3'
miRNA:   3'- gAGACUGUUGUcuuGGG--------CCGUCGaGG- -5'
3591 5' -54 NC_001650.1 + 53937 0.67 0.960486
Target:  5'- aUCUGAUuggucCAGAGCCCucucGGCcgcGCUCUg -3'
miRNA:   3'- gAGACUGuu---GUCUUGGG----CCGu--CGAGG- -5'
3591 5' -54 NC_001650.1 + 180551 0.67 0.960486
Target:  5'- gUCUGGCAGCGu--CCCccucagcaGGCAGCgCCu -3'
miRNA:   3'- gAGACUGUUGUcuuGGG--------CCGUCGaGG- -5'
3591 5' -54 NC_001650.1 + 26230 0.67 0.956819
Target:  5'- uUUUGACucuccacAUAGAACuuGGCuAGCUCg -3'
miRNA:   3'- gAGACUGu------UGUCUUGggCCG-UCGAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.