miRNA display CGI


Results 21 - 40 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3592 5' -56.7 NC_001650.1 + 170950 0.67 0.850883
Target:  5'- uGGUCaUGCgaugACCGCGagguACCcUCCACCCAg -3'
miRNA:   3'- -CCAG-ACG----UGGUGU----UGGuGGGUGGGUg -5'
3592 5' -56.7 NC_001650.1 + 169277 0.73 0.527456
Target:  5'- -aUCUGCcCgGCAACCGCCUACCuCAUa -3'
miRNA:   3'- ccAGACGuGgUGUUGGUGGGUGG-GUG- -5'
3592 5' -56.7 NC_001650.1 + 169133 0.77 0.367304
Target:  5'- -aUCUGCcCgGCAACCGCCUACCuCACa -3'
miRNA:   3'- ccAGACGuGgUGUUGGUGGGUGG-GUG- -5'
3592 5' -56.7 NC_001650.1 + 168419 0.67 0.873317
Target:  5'- --cCUGCcUgGCAACCGCCUACCuCAUc -3'
miRNA:   3'- ccaGACGuGgUGUUGGUGGGUGG-GUG- -5'
3592 5' -56.7 NC_001650.1 + 167934 0.74 0.479854
Target:  5'- -aUCUGCcUgGCAACCGCCUACCuCACa -3'
miRNA:   3'- ccAGACGuGgUGUUGGUGGGUGG-GUG- -5'
3592 5' -56.7 NC_001650.1 + 167555 0.72 0.626906
Target:  5'- gGGUCUGCcugGCaACAGCCuaccucACUCACCCAUa -3'
miRNA:   3'- -CCAGACG---UGgUGUUGG------UGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 167113 0.7 0.726571
Target:  5'- aGGUCagucgccccuUGCACaacacccCAGCCAcucccCCCGCCCACg -3'
miRNA:   3'- -CCAG----------ACGUGgu-----GUUGGU-----GGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 165750 0.66 0.912424
Target:  5'- ----aGUGCUGCAGCUGCCCGCUCAa -3'
miRNA:   3'- ccagaCGUGGUGUUGGUGGGUGGGUg -5'
3592 5' -56.7 NC_001650.1 + 165016 0.69 0.783122
Target:  5'- gGGUCUGC-UCGCGGCCGCCgGCg--- -3'
miRNA:   3'- -CCAGACGuGGUGUUGGUGGgUGggug -5'
3592 5' -56.7 NC_001650.1 + 164893 0.7 0.716818
Target:  5'- ----cGCGCCGCcGCCAcCCCACCCc- -3'
miRNA:   3'- ccagaCGUGGUGuUGGU-GGGUGGGug -5'
3592 5' -56.7 NC_001650.1 + 164874 0.67 0.880383
Target:  5'- gGGUUgaGCGCCGCGGucCCACCgggaGCCCGg -3'
miRNA:   3'- -CCAGa-CGUGGUGUU--GGUGGg---UGGGUg -5'
3592 5' -56.7 NC_001650.1 + 164384 0.69 0.773975
Target:  5'- uGGUCcGCGCUGCAGa-ACUCGCCCAg -3'
miRNA:   3'- -CCAGaCGUGGUGUUggUGGGUGGGUg -5'
3592 5' -56.7 NC_001650.1 + 163735 0.67 0.858561
Target:  5'- gGGUCUGgUGCCG-GGCCGCCCcuACCCu- -3'
miRNA:   3'- -CCAGAC-GUGGUgUUGGUGGG--UGGGug -5'
3592 5' -56.7 NC_001650.1 + 163232 0.69 0.783122
Target:  5'- cGUCUGCGCCACu-CU-CCCACCa-- -3'
miRNA:   3'- cCAGACGUGGUGuuGGuGGGUGGgug -5'
3592 5' -56.7 NC_001650.1 + 163047 0.71 0.636985
Target:  5'- cGGUC-GCAacCCGC-GCCGCCCGCCUg- -3'
miRNA:   3'- -CCAGaCGU--GGUGuUGGUGGGUGGGug -5'
3592 5' -56.7 NC_001650.1 + 159842 0.66 0.90028
Target:  5'- gGGUCUGgGaCCACugAACCGCUUgaaGCCCGg -3'
miRNA:   3'- -CCAGACgU-GGUG--UUGGUGGG---UGGGUg -5'
3592 5' -56.7 NC_001650.1 + 159204 0.75 0.461404
Target:  5'- cGUCUGUugcauCCACuuCCACuCCAUCCACa -3'
miRNA:   3'- cCAGACGu----GGUGuuGGUG-GGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 159173 0.67 0.858561
Target:  5'- ----gGCACCACGuCCACCCugaACaCCACc -3'
miRNA:   3'- ccagaCGUGGUGUuGGUGGG---UG-GGUG- -5'
3592 5' -56.7 NC_001650.1 + 159128 0.66 0.918153
Target:  5'- gGGcUCUGUACgaGCAgcACCACCaGCaCCACa -3'
miRNA:   3'- -CC-AGACGUGg-UGU--UGGUGGgUG-GGUG- -5'
3592 5' -56.7 NC_001650.1 + 158063 0.72 0.586697
Target:  5'- uGGUgUGCACCucCAcccugGCCACCUGCCC-Cg -3'
miRNA:   3'- -CCAgACGUGGu-GU-----UGGUGGGUGGGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.