Results 21 - 40 of 203 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 91828 | 0.7 | 0.716818 |
Target: 5'- aGGUCaGCAUCACcuCCAgCCUGCUCACc -3' miRNA: 3'- -CCAGaCGUGGUGuuGGU-GGGUGGGUG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 145951 | 0.7 | 0.697109 |
Target: 5'- cGGacCUGCccGCCAUGgcccuGCCGCCCugCCACc -3' miRNA: 3'- -CCa-GACG--UGGUGU-----UGGUGGGugGGUG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 76959 | 0.73 | 0.55685 |
Target: 5'- aGGacUCUGCggugGCCAUcGCCACCCugCUGCa -3' miRNA: 3'- -CC--AGACG----UGGUGuUGGUGGGugGGUG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 31008 | 0.76 | 0.38341 |
Target: 5'- cGGUCaGCACgCGCAgcGCCGCCCcguccCCCGCg -3' miRNA: 3'- -CCAGaCGUG-GUGU--UGGUGGGu----GGGUG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 142990 | 0.68 | 0.809742 |
Target: 5'- cGUCUGgGCC-CGGCCGCC-GCCCu- -3' miRNA: 3'- cCAGACgUGGuGUUGGUGGgUGGGug -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 78903 | 0.69 | 0.773975 |
Target: 5'- gGGUCUGCACaaaaAACUcUgCGCCCGCg -3' miRNA: 3'- -CCAGACGUGgug-UUGGuGgGUGGGUG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 21746 | 0.71 | 0.687171 |
Target: 5'- gGGUC--CACCGCAGCCgcgGCCCuCCCAg -3' miRNA: 3'- -CCAGacGUGGUGUUGG---UGGGuGGGUg -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 142925 | 0.8 | 0.238133 |
Target: 5'- uGGUCUcggccGCGCCGCcgccGCCGCCCGCUCGCc -3' miRNA: 3'- -CCAGA-----CGUGGUGu---UGGUGGGUGGGUG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 35520 | 0.69 | 0.764705 |
Target: 5'- aGGUCaGgGCCACAGgCgugugGCCCugGCCCGCg -3' miRNA: 3'- -CCAGaCgUGGUGUUgG-----UGGG--UGGGUG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 15804 | 1.1 | 0.002439 |
Target: 5'- gGGUCUGCACCACAACCACCCACCCACc -3' miRNA: 3'- -CCAGACGUGGUGUUGGUGGGUGGGUG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 93144 | 0.71 | 0.687171 |
Target: 5'- cGGUCUuuGCCGcCAGCCcccggauCCUGCCCACu -3' miRNA: 3'- -CCAGAcgUGGU-GUUGGu------GGGUGGGUG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 52138 | 0.7 | 0.745831 |
Target: 5'- -uUCUGCAacuCCACAauuGCCACCUACgUGCg -3' miRNA: 3'- ccAGACGU---GGUGU---UGGUGGGUGgGUG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 72931 | 0.71 | 0.636985 |
Target: 5'- cGUCUGCcccaccagcuugGCCcucucgugggugGCGACCGCCUGCCCAg -3' miRNA: 3'- cCAGACG------------UGG------------UGUUGGUGGGUGGGUg -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 158063 | 0.72 | 0.586697 |
Target: 5'- uGGUgUGCACCucCAcccugGCCACCUGCCC-Cg -3' miRNA: 3'- -CCAgACGUGGu-GU-----UGGUGGGUGGGuG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 25673 | 0.75 | 0.440659 |
Target: 5'- gGGUCUGgagagcagcggcccCACCACAACCACCUugCUu- -3' miRNA: 3'- -CCAGAC--------------GUGGUGUUGGUGGGugGGug -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 96323 | 0.76 | 0.399979 |
Target: 5'- aGGaCUGCACCcaguGCAACCcCCCuuCCCACg -3' miRNA: 3'- -CCaGACGUGG----UGUUGGuGGGu-GGGUG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 119525 | 0.68 | 0.82672 |
Target: 5'- cGGUCUGCAUgCugGGCUACUCcUCCAg -3' miRNA: 3'- -CCAGACGUG-GugUUGGUGGGuGGGUg -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 23522 | 0.68 | 0.809742 |
Target: 5'- --aCUGCugCGCGACCcuGCCCGaggcgcaccugUCCACg -3' miRNA: 3'- ccaGACGugGUGUUGG--UGGGU-----------GGGUG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 22931 | 0.69 | 0.783122 |
Target: 5'- uGGaCaGCACCGC--CCuCCCGCCCGCc -3' miRNA: 3'- -CCaGaCGUGGUGuuGGuGGGUGGGUG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 130175 | 0.69 | 0.773975 |
Target: 5'- gGGcCcGCGCCACGGgCGCCUccaggggcguGCCCGCc -3' miRNA: 3'- -CCaGaCGUGGUGUUgGUGGG----------UGGGUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home