miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3595 5' -60.1 NC_001650.1 + 36419 0.66 0.781024
Target:  5'- cGGUGGCCGGGGa-GUGCguggGcGCCAa- -3'
miRNA:   3'- cUUACCGGCUCCggCACGa---C-CGGUcg -5'
3595 5' -60.1 NC_001650.1 + 36341 0.66 0.781024
Target:  5'- aGGUGGCCGGGGUgGUGCccaUagacauguaccaGGUguGCa -3'
miRNA:   3'- cUUACCGGCUCCGgCACG---A------------CCGguCG- -5'
3595 5' -60.1 NC_001650.1 + 117831 0.66 0.781024
Target:  5'- ---aGGCCGAgcGGUCG-GCgGGCauaGGCg -3'
miRNA:   3'- cuuaCCGGCU--CCGGCaCGaCCGg--UCG- -5'
3595 5' -60.1 NC_001650.1 + 76224 0.66 0.771983
Target:  5'- gGAGUGGuaGuGGUgGUGgUGGCC-GCu -3'
miRNA:   3'- -CUUACCggCuCCGgCACgACCGGuCG- -5'
3595 5' -60.1 NC_001650.1 + 78599 0.66 0.771072
Target:  5'- ---cGGCaacugGAGGCUGUGCgGGCgccgcugCGGCa -3'
miRNA:   3'- cuuaCCGg----CUCCGGCACGaCCG-------GUCG- -5'
3595 5' -60.1 NC_001650.1 + 88908 0.66 0.762824
Target:  5'- --cUGcCCGAguucuucagGGCCcUGCUGGCCAGg -3'
miRNA:   3'- cuuACcGGCU---------CCGGcACGACCGGUCg -5'
3595 5' -60.1 NC_001650.1 + 60126 0.66 0.762824
Target:  5'- ----cGCgGAGGCCGcguccGCggucuccagGGCCAGCa -3'
miRNA:   3'- cuuacCGgCUCCGGCa----CGa--------CCGGUCG- -5'
3595 5' -60.1 NC_001650.1 + 155003 0.66 0.761902
Target:  5'- ---cGGCCacccuucGGGGCaCGUGCUGccacuGCCAGg -3'
miRNA:   3'- cuuaCCGG-------CUCCG-GCACGAC-----CGGUCg -5'
3595 5' -60.1 NC_001650.1 + 57635 0.66 0.761902
Target:  5'- ---aGGCCucuggggGAGuGCCGUGCgcgcccgGGCC-GCa -3'
miRNA:   3'- cuuaCCGG-------CUC-CGGCACGa------CCGGuCG- -5'
3595 5' -60.1 NC_001650.1 + 46238 0.66 0.761902
Target:  5'- --uUGGCCGcGGCCGcUGUcaaucagcgauccUGGCCcGUg -3'
miRNA:   3'- cuuACCGGCuCCGGC-ACG-------------ACCGGuCG- -5'
3595 5' -60.1 NC_001650.1 + 138967 0.66 0.753556
Target:  5'- --cUGGCagacaGGGGCCaUGCUGGCagacaggGGCc -3'
miRNA:   3'- cuuACCGg----CUCCGGcACGACCGg------UCG- -5'
3595 5' -60.1 NC_001650.1 + 157950 0.66 0.753556
Target:  5'- cGAGUGGuuGAGGCacCGcGCgugGGCCucGUg -3'
miRNA:   3'- -CUUACCggCUCCG--GCaCGa--CCGGu-CG- -5'
3595 5' -60.1 NC_001650.1 + 138891 0.66 0.753556
Target:  5'- --cUGGCagacaGGGGCCaUGCUGGCagacaggGGCc -3'
miRNA:   3'- cuuACCGg----CUCCGGcACGACCGg------UCG- -5'
3595 5' -60.1 NC_001650.1 + 138929 0.66 0.753556
Target:  5'- --cUGGCagacaGGGGCCaUGCUGGCagacaggGGCc -3'
miRNA:   3'- cuuACCGg----CUCCGGcACGACCGg------UCG- -5'
3595 5' -60.1 NC_001650.1 + 597 0.66 0.744188
Target:  5'- uGAggGGgCGAGGCCGgGCUG-CC-GCc -3'
miRNA:   3'- -CUuaCCgGCUCCGGCaCGACcGGuCG- -5'
3595 5' -60.1 NC_001650.1 + 167304 0.66 0.744188
Target:  5'- uGAggGGgCGAGGCCGgGCUG-CC-GCc -3'
miRNA:   3'- -CUuaCCgGCUCCGGCaCGACcGGuCG- -5'
3595 5' -60.1 NC_001650.1 + 67449 0.66 0.744188
Target:  5'- cGAGcGGCCGc-GCCucucGCUGGCCAGg -3'
miRNA:   3'- -CUUaCCGGCucCGGca--CGACCGGUCg -5'
3595 5' -60.1 NC_001650.1 + 145587 0.66 0.744188
Target:  5'- ---gGGCuCGAGGcCCGUGa-GGUgGGCg -3'
miRNA:   3'- cuuaCCG-GCUCC-GGCACgaCCGgUCG- -5'
3595 5' -60.1 NC_001650.1 + 50532 0.66 0.734727
Target:  5'- ---aGGCCGGGGCCG-GgaGGgacgaGGCg -3'
miRNA:   3'- cuuaCCGGCUCCGGCaCgaCCgg---UCG- -5'
3595 5' -60.1 NC_001650.1 + 102729 0.66 0.734727
Target:  5'- ---gGGCUGGGGCUGcgGCUGcaucGCgGGCu -3'
miRNA:   3'- cuuaCCGGCUCCGGCa-CGAC----CGgUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.