miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3596 3' -68.1 NC_001650.1 + 22671 0.66 0.470947
Target:  5'- gCGGccGGcGGCUGGCCUCCauccuGGcGGCCGUcCa -3'
miRNA:   3'- -GCC--CC-CCGACUGGGGG-----CC-CCGGCAcG- -5'
3596 3' -68.1 NC_001650.1 + 155862 0.66 0.470947
Target:  5'- cCGGGacGGGCUGGgggcgUUCgCGGGGCuCGUGg -3'
miRNA:   3'- -GCCC--CCCGACU-----GGGgGCCCCG-GCACg -5'
3596 3' -68.1 NC_001650.1 + 120818 0.66 0.470947
Target:  5'- gGcGGGGGCggggGugCCCUcGGGCgGcgGCu -3'
miRNA:   3'- gC-CCCCCGa---CugGGGGcCCCGgCa-CG- -5'
3596 3' -68.1 NC_001650.1 + 132758 0.66 0.470947
Target:  5'- cCGGGGGcGCgu-CgCCCgGGGGgCGcGCg -3'
miRNA:   3'- -GCCCCC-CGacuG-GGGgCCCCgGCaCG- -5'
3596 3' -68.1 NC_001650.1 + 108815 0.66 0.462501
Target:  5'- uCGGGacaacCUGGCCCgCGcgugggagcGGGCCGUGCa -3'
miRNA:   3'- -GCCCccc--GACUGGGgGC---------CCCGGCACG- -5'
3596 3' -68.1 NC_001650.1 + 120517 0.66 0.462501
Target:  5'- uCGGGGaGCagGugCCuCUGGGcGCCG-GCg -3'
miRNA:   3'- -GCCCCcCGa-CugGG-GGCCC-CGGCaCG- -5'
3596 3' -68.1 NC_001650.1 + 132208 0.66 0.462501
Target:  5'- -aGGGGGCUcuugaGGCCCauguccagCgGGGGCagCGUGCu -3'
miRNA:   3'- gcCCCCCGA-----CUGGG--------GgCCCCG--GCACG- -5'
3596 3' -68.1 NC_001650.1 + 39955 0.66 0.457472
Target:  5'- uGGGGGGCUuuaaGCUCCCGGGuagacucaauauugaGCCa-GCu -3'
miRNA:   3'- gCCCCCCGAc---UGGGGGCCC---------------CGGcaCG- -5'
3596 3' -68.1 NC_001650.1 + 82486 0.66 0.445852
Target:  5'- gCGGGGGGCUcccuCCUCCGGGaCCc--- -3'
miRNA:   3'- -GCCCCCCGAcu--GGGGGCCCcGGcacg -5'
3596 3' -68.1 NC_001650.1 + 22030 0.66 0.445852
Target:  5'- gGGauGGGGgUGGucgccucccccUCCCCGGGGCCucgGCc -3'
miRNA:   3'- gCC--CCCCgACU-----------GGGGGCCCCGGca-CG- -5'
3596 3' -68.1 NC_001650.1 + 93366 0.66 0.445852
Target:  5'- -cGGGGGC-GGCCUuuGGGGCgcugGCc -3'
miRNA:   3'- gcCCCCCGaCUGGGggCCCCGgca-CG- -5'
3596 3' -68.1 NC_001650.1 + 133929 0.66 0.445852
Target:  5'- uGGGGGcGCcccccaGACCCCggcaGGcGGCCGcagUGCc -3'
miRNA:   3'- gCCCCC-CGa-----CUGGGGg---CC-CCGGC---ACG- -5'
3596 3' -68.1 NC_001650.1 + 171724 0.66 0.440923
Target:  5'- cCGGGGGGCcuccgugugucUGAuaggcggacggggguCCCuCCGGGGgUGgggGCu -3'
miRNA:   3'- -GCCCCCCG-----------ACU---------------GGG-GGCCCCgGCa--CG- -5'
3596 3' -68.1 NC_001650.1 + 5017 0.66 0.440923
Target:  5'- cCGGGGGGCcuccgugugucUGAuaggcggacggggguCCCuCCGGGGgUGgggGCu -3'
miRNA:   3'- -GCCCCCCG-----------ACU---------------GGG-GGCCCCgGCa--CG- -5'
3596 3' -68.1 NC_001650.1 + 121084 0.66 0.437654
Target:  5'- gCGGGGGGC--GCCcguCCUGGGGuuCCGggacGCg -3'
miRNA:   3'- -GCCCCCCGacUGG---GGGCCCC--GGCa---CG- -5'
3596 3' -68.1 NC_001650.1 + 26551 0.66 0.429543
Target:  5'- gCGGGGGGCgagGuguucucgcuGCCCCugcucuCGGGGCUcacgGUGg -3'
miRNA:   3'- -GCCCCCCGa--C----------UGGGG------GCCCCGG----CACg -5'
3596 3' -68.1 NC_001650.1 + 16784 0.66 0.42472
Target:  5'- aGGGGgcuuccuuacaacauGGCUGACCCCCucaugcacacaGGGGUCu--- -3'
miRNA:   3'- gCCCC---------------CCGACUGGGGG-----------CCCCGGcacg -5'
3596 3' -68.1 NC_001650.1 + 183491 0.66 0.42472
Target:  5'- aGGGGgcuuccuuacaacauGGCUGACCCCCucaugcacacaGGGGUCu--- -3'
miRNA:   3'- gCCCC---------------CCGACUGGGGG-----------CCCCGGcacg -5'
3596 3' -68.1 NC_001650.1 + 134425 0.66 0.421522
Target:  5'- -aGGGGGCUcucuGCCCgCGGGGgaggCGUGUg -3'
miRNA:   3'- gcCCCCCGAc---UGGGgGCCCCg---GCACG- -5'
3596 3' -68.1 NC_001650.1 + 73708 0.66 0.421522
Target:  5'- aGGuGGcGaGCUGGCCguggcugaggCCCggGGGGCCGUGg -3'
miRNA:   3'- gCC-CC-C-CGACUGG----------GGG--CCCCGGCACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.