miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3596 5' -51.6 NC_001650.1 + 38133 0.66 0.996183
Target:  5'- cGGC-CGgggGGAuguuGUGCugGGcCGCGUa -3'
miRNA:   3'- cCCGuGCa--UCUu---CAUGugUCaGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 78111 0.66 0.996183
Target:  5'- cGGGgGCGac-GAGUGCAUAGUgGUGa -3'
miRNA:   3'- -CCCgUGCaucUUCAUGUGUCAgCGCg -5'
3596 5' -51.6 NC_001650.1 + 24183 0.66 0.996183
Target:  5'- gGGGuCGCGcUGGAGGUGcCGCuGUCcucCGCc -3'
miRNA:   3'- -CCC-GUGC-AUCUUCAU-GUGuCAGc--GCG- -5'
3596 5' -51.6 NC_001650.1 + 109117 0.66 0.996123
Target:  5'- aGGCcagcuccGCGUAGuGG-ACGCAGgcggugaggCGCGCg -3'
miRNA:   3'- cCCG-------UGCAUCuUCaUGUGUCa--------GCGCG- -5'
3596 5' -51.6 NC_001650.1 + 155185 0.66 0.996123
Target:  5'- aGGGCgaucaugcccaggGCGUccaGGGAGUACucCAGcccgucCGCGCg -3'
miRNA:   3'- -CCCG-------------UGCA---UCUUCAUGu-GUCa-----GCGCG- -5'
3596 5' -51.6 NC_001650.1 + 94499 0.66 0.995548
Target:  5'- cGGGCugguCGUGGGAGUGgGCgucuaugaaGGUCuCGUu -3'
miRNA:   3'- -CCCGu---GCAUCUUCAUgUG---------UCAGcGCG- -5'
3596 5' -51.6 NC_001650.1 + 168507 0.66 0.995548
Target:  5'- gGGGUuuAUGgaguGAGGUAgGCAGUUGCcagGCa -3'
miRNA:   3'- -CCCG--UGCau--CUUCAUgUGUCAGCG---CG- -5'
3596 5' -51.6 NC_001650.1 + 105906 0.66 0.995126
Target:  5'- aGGCACGUAGGgccgcaccaggauagGGUACAgguUGGUgaGCGUg -3'
miRNA:   3'- cCCGUGCAUCU---------------UCAUGU---GUCAg-CGCG- -5'
3596 5' -51.6 NC_001650.1 + 22371 0.66 0.994828
Target:  5'- uGGGCAgCGgGGAGG-ACcCGuUCGCGCu -3'
miRNA:   3'- -CCCGU-GCaUCUUCaUGuGUcAGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 46489 0.66 0.994595
Target:  5'- aGGuCGCG-AGGAGUucaccucggggucaGCcacCGGUCGCGCg -3'
miRNA:   3'- cCC-GUGCaUCUUCA--------------UGu--GUCAGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 48009 0.66 0.994017
Target:  5'- gGGGC-CGcucAAGUGCAUAGUCacugagaaccugGCGCu -3'
miRNA:   3'- -CCCGuGCaucUUCAUGUGUCAG------------CGCG- -5'
3596 5' -51.6 NC_001650.1 + 40390 0.66 0.994017
Target:  5'- gGGGCGCGaGGGcgAGUcaccaGCGgGGUCaCGCg -3'
miRNA:   3'- -CCCGUGCaUCU--UCA-----UGUgUCAGcGCG- -5'
3596 5' -51.6 NC_001650.1 + 136263 0.66 0.994017
Target:  5'- gGGGCugG-GGGAGUACucuCuGccccUCGUGCg -3'
miRNA:   3'- -CCCGugCaUCUUCAUGu--GuC----AGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 101173 0.66 0.994017
Target:  5'- aGGCACucgugGUAGAGGgugauCAGUCGCa- -3'
miRNA:   3'- cCCGUG-----CAUCUUCaugu-GUCAGCGcg -5'
3596 5' -51.6 NC_001650.1 + 80441 0.66 0.994017
Target:  5'- --uCACGUAGAAGgcgGCGCAcGUCcuGCGUc -3'
miRNA:   3'- cccGUGCAUCUUCa--UGUGU-CAG--CGCG- -5'
3596 5' -51.6 NC_001650.1 + 130577 0.66 0.993107
Target:  5'- gGGGC-CGUGGAgcuccacgAGUugG-AGUgCGCGCc -3'
miRNA:   3'- -CCCGuGCAUCU--------UCAugUgUCA-GCGCG- -5'
3596 5' -51.6 NC_001650.1 + 132755 0.66 0.993107
Target:  5'- gGGGCGCGUcgcccGGggG-GCGCGcGUUGCcCa -3'
miRNA:   3'- -CCCGUGCA-----UCuuCaUGUGU-CAGCGcG- -5'
3596 5' -51.6 NC_001650.1 + 1936 0.66 0.992912
Target:  5'- uGGGUugGgucagggggauGAGGUAgGCGGUUGCcagGCa -3'
miRNA:   3'- -CCCGugCau---------CUUCAUgUGUCAGCG---CG- -5'
3596 5' -51.6 NC_001650.1 + 168643 0.66 0.992912
Target:  5'- uGGGUugGgucagggggauGAGGUAgGCGGUUGCcagGCa -3'
miRNA:   3'- -CCCGugCau---------CUUCAUgUGUCAGCG---CG- -5'
3596 5' -51.6 NC_001650.1 + 56269 0.67 0.99251
Target:  5'- gGGGUugGgcGAAGgACGgGGgggguggugccuggCGCGCg -3'
miRNA:   3'- -CCCGugCauCUUCaUGUgUCa-------------GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.