miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3597 3' -55.3 NC_001650.1 + 168470 0.66 0.943816
Target:  5'- cAUUggCCAUGGAGGCCcugUgGGAGGUGcCc -3'
miRNA:   3'- -UAGa-GGUAUUUCCGG---AgCCUCCGCuG- -5'
3597 3' -55.3 NC_001650.1 + 1763 0.66 0.943816
Target:  5'- cAUUggCCAUGGAGGCCcugUgGGAGGUGcCc -3'
miRNA:   3'- -UAGa-GGUAUUUCCGG---AgCCUCCGCuG- -5'
3597 3' -55.3 NC_001650.1 + 168182 0.66 0.943816
Target:  5'- cAUCUagCCaAUGGGGGCC-CGGgGGGCGGg -3'
miRNA:   3'- -UAGA--GG-UAUUUCCGGaGCC-UCCGCUg -5'
3597 3' -55.3 NC_001650.1 + 1475 0.66 0.943816
Target:  5'- cAUCUagCCaAUGGGGGCC-CGGgGGGCGGg -3'
miRNA:   3'- -UAGA--GG-UAUUUCCGGaGCC-UCCGCUg -5'
3597 3' -55.3 NC_001650.1 + 108070 0.66 0.943362
Target:  5'- cUgUCCAggcuguuUGAcGGGUCgCGGGGGCGGCa -3'
miRNA:   3'- uAgAGGU-------AUU-UCCGGaGCCUCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 121569 0.66 0.939168
Target:  5'- -aCUCCGcGAcccccuGGaCCgCGGGGGCGGCg -3'
miRNA:   3'- uaGAGGUaUUu-----CC-GGaGCCUCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 127679 0.66 0.939168
Target:  5'- -cCUCCAUcucgAGGGGCUUCagGGAGGCc-- -3'
miRNA:   3'- uaGAGGUA----UUUCCGGAG--CCUCCGcug -5'
3597 3' -55.3 NC_001650.1 + 82998 0.66 0.939168
Target:  5'- cAUCgCCA-GGGGGCUggaggCGGAGGUGAa -3'
miRNA:   3'- -UAGaGGUaUUUCCGGa----GCCUCCGCUg -5'
3597 3' -55.3 NC_001650.1 + 58785 0.66 0.936264
Target:  5'- -cCUCCAUccacccggacgcccuGcccGGGGCCaagGGGGGCGACa -3'
miRNA:   3'- uaGAGGUA---------------U---UUCCGGag-CCUCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 117751 0.66 0.93428
Target:  5'- -aCUCCAgGucGGgUUCaGGGGCGACa -3'
miRNA:   3'- uaGAGGUaUuuCCgGAGcCUCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 93032 0.66 0.93428
Target:  5'- uUCUCCAccuuccUGAuaacGGGCacggCGGGGGCGGg -3'
miRNA:   3'- uAGAGGU------AUU----UCCGga--GCCUCCGCUg -5'
3597 3' -55.3 NC_001650.1 + 107924 0.66 0.93428
Target:  5'- -aUUCCu---GGGCCcUGGAGGCGuCg -3'
miRNA:   3'- uaGAGGuauuUCCGGaGCCUCCGCuG- -5'
3597 3' -55.3 NC_001650.1 + 21927 0.66 0.93428
Target:  5'- -gUUCCAgc-AGcGCCUgcaucaUGGGGGCGACg -3'
miRNA:   3'- uaGAGGUauuUC-CGGA------GCCUCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 132364 0.66 0.93428
Target:  5'- uUCUCCGccccgccGGCCUCGGuGG-GGCc -3'
miRNA:   3'- uAGAGGUauuu---CCGGAGCCuCCgCUG- -5'
3597 3' -55.3 NC_001650.1 + 135256 0.66 0.93428
Target:  5'- aAUC-CCAUAGuGGCCgCuGAGGUGGCc -3'
miRNA:   3'- -UAGaGGUAUUuCCGGaGcCUCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 46502 0.66 0.93428
Target:  5'- cUCUCCcc---GGCgUCGGGgccGGCGGCg -3'
miRNA:   3'- uAGAGGuauuuCCGgAGCCU---CCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 167533 0.66 0.923779
Target:  5'- ---aCCaAUGGGGGCC-CGGgggaGGGCGGCa -3'
miRNA:   3'- uagaGG-UAUUUCCGGaGCC----UCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 79248 0.66 0.923779
Target:  5'- cUCUCCA-GAGGGCuCUCccgGGAGGCc-- -3'
miRNA:   3'- uAGAGGUaUUUCCG-GAG---CCUCCGcug -5'
3597 3' -55.3 NC_001650.1 + 826 0.66 0.923779
Target:  5'- ---aCCaAUGGGGGCC-CGGgggaGGGCGGCa -3'
miRNA:   3'- uagaGG-UAUUUCCGGaGCC----UCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 125017 0.66 0.923779
Target:  5'- gAUCgCCAgagGGGGUCcCGGGGGCGGa -3'
miRNA:   3'- -UAGaGGUau-UUCCGGaGCCUCCGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.