miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3599 3' -65.9 NC_001650.1 + 109477 0.66 0.580037
Target:  5'- gCGggGCGCcccccacuaucGCCaCCCCGCGgGgaaGGGGGg -3'
miRNA:   3'- -GCa-UGCG-----------CGG-GGGGCGCgCga-CCCCC- -5'
3599 3' -65.9 NC_001650.1 + 59141 0.66 0.580037
Target:  5'- ---cCGgGCCUCCCGCGCcccagucuauCUGGGcGGg -3'
miRNA:   3'- gcauGCgCGGGGGGCGCGc---------GACCC-CC- -5'
3599 3' -65.9 NC_001650.1 + 78239 0.66 0.5625
Target:  5'- aGUGCGCGCCCaCCGaCGauuacaacaccuucCUGGGGa -3'
miRNA:   3'- gCAUGCGCGGGgGGC-GCgc------------GACCCCc -5'
3599 3' -65.9 NC_001650.1 + 79059 0.66 0.56158
Target:  5'- uCGUACcuccCGUCCCcguCCGCGaGCaGGGGGa -3'
miRNA:   3'- -GCAUGc---GCGGGG---GGCGCgCGaCCCCC- -5'
3599 3' -65.9 NC_001650.1 + 158350 0.66 0.56158
Target:  5'- --aAgGCGCCCCCCucgGCG-GCcGGGGu -3'
miRNA:   3'- gcaUgCGCGGGGGG---CGCgCGaCCCCc -5'
3599 3' -65.9 NC_001650.1 + 80873 0.66 0.56158
Target:  5'- aCGUugGCGuggaucuuCCUCCCGUG-GCaGGGGa -3'
miRNA:   3'- -GCAugCGC--------GGGGGGCGCgCGaCCCCc -5'
3599 3' -65.9 NC_001650.1 + 91162 0.66 0.56158
Target:  5'- uGUGCGUGgccugcaaCUCCCCG-GUGCUGGuuaGGGa -3'
miRNA:   3'- gCAUGCGC--------GGGGGGCgCGCGACC---CCC- -5'
3599 3' -65.9 NC_001650.1 + 71824 0.66 0.56158
Target:  5'- --gGCGCGCCCaCCGCGUaaaaGUcaaacaGGGGGu -3'
miRNA:   3'- gcaUGCGCGGGgGGCGCG----CGa-----CCCCC- -5'
3599 3' -65.9 NC_001650.1 + 129339 0.66 0.56158
Target:  5'- ---cCGUGUCcucggCCCCGgGCGC-GGGGGa -3'
miRNA:   3'- gcauGCGCGG-----GGGGCgCGCGaCCCCC- -5'
3599 3' -65.9 NC_001650.1 + 121955 0.66 0.552411
Target:  5'- cCGUGC-UGCUCCCCGaGCuggaggccauGCUGcGGGGg -3'
miRNA:   3'- -GCAUGcGCGGGGGGCgCG----------CGAC-CCCC- -5'
3599 3' -65.9 NC_001650.1 + 74911 0.66 0.552411
Target:  5'- gGU-CGCGCCCCCgGaCGac--GGGGGa -3'
miRNA:   3'- gCAuGCGCGGGGGgC-GCgcgaCCCCC- -5'
3599 3' -65.9 NC_001650.1 + 100305 0.66 0.549669
Target:  5'- gCGUGCGagGCCgUCCGCaggugcggggagagGCGCgccucGGGGGu -3'
miRNA:   3'- -GCAUGCg-CGGgGGGCG--------------CGCGa----CCCCC- -5'
3599 3' -65.9 NC_001650.1 + 24061 0.66 0.546931
Target:  5'- cCGaGCGCGCCUCCUucaggucgggggugaGCuuccaaaagGCGCaGGGGGu -3'
miRNA:   3'- -GCaUGCGCGGGGGG---------------CG---------CGCGaCCCCC- -5'
3599 3' -65.9 NC_001650.1 + 79400 0.66 0.543287
Target:  5'- cCGU-CGCGCCCCCgGgCGgCGCcccgUGGGa- -3'
miRNA:   3'- -GCAuGCGCGGGGGgC-GC-GCG----ACCCcc -5'
3599 3' -65.9 NC_001650.1 + 121795 0.66 0.532405
Target:  5'- --gGCGCuGCCCUCCGC-CGCccccgcgguccaGGGGGu -3'
miRNA:   3'- gcaUGCG-CGGGGGGCGcGCGa-----------CCCCC- -5'
3599 3' -65.9 NC_001650.1 + 60536 0.66 0.525194
Target:  5'- --gGCGCcugcaGCUCCCCGCccucCUGGGGGa -3'
miRNA:   3'- gcaUGCG-----CGGGGGGCGcgc-GACCCCC- -5'
3599 3' -65.9 NC_001650.1 + 21620 0.66 0.523397
Target:  5'- gGUGgGCGCCgucucugagcugCCCGCgGgGCUGGGGu -3'
miRNA:   3'- gCAUgCGCGGg-----------GGGCG-CgCGACCCCc -5'
3599 3' -65.9 NC_001650.1 + 53075 0.66 0.522499
Target:  5'- --aGCGCGCCCUCCugcuacgagaggagGCGCGCccgcucccaGGGcGGg -3'
miRNA:   3'- gcaUGCGCGGGGGG--------------CGCGCGa--------CCC-CC- -5'
3599 3' -65.9 NC_001650.1 + 110668 0.67 0.516233
Target:  5'- gCGcACGCGCCCCCUcggGCGaUGCcGGaccGGGa -3'
miRNA:   3'- -GCaUGCGCGGGGGG---CGC-GCGaCC---CCC- -5'
3599 3' -65.9 NC_001650.1 + 35381 0.67 0.516233
Target:  5'- gGUGCugGUGUggggcaccaCCCCCGCgGCGCcUGGGGu -3'
miRNA:   3'- gCAUG--CGCG---------GGGGGCG-CGCG-ACCCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.