miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3599 5' -52.7 NC_001650.1 + 184421 0.69 0.93467
Target:  5'- -gCGCCCGucgACAUuuGGGCCugagaaaauggagGGGGCGUg -3'
miRNA:   3'- caGCGGGU---UGUAuuUCUGG-------------CUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 182881 0.7 0.919123
Target:  5'- gGUUGCCCAAgGacucucaccUAGAGGCCagguguagcuauGGGGCGUg -3'
miRNA:   3'- -CAGCGGGUUgU---------AUUUCUGG------------CUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 178156 0.7 0.919123
Target:  5'- cGUCGCCgCAGCGgca--GCCG-GGCGUg -3'
miRNA:   3'- -CAGCGG-GUUGUauuucUGGCuCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 177930 0.73 0.780543
Target:  5'- -cCGCCU---GUAAGGACCGAGGCu- -3'
miRNA:   3'- caGCGGGuugUAUUUCUGGCUCCGcg -5'
3599 5' -52.7 NC_001650.1 + 173937 0.75 0.681813
Target:  5'- aGUCuGCCCAGCAaccggggucuuUAuuGGCCGAgGGUGCa -3'
miRNA:   3'- -CAG-CGGGUUGU-----------AUuuCUGGCU-CCGCG- -5'
3599 5' -52.7 NC_001650.1 + 173605 0.71 0.88053
Target:  5'- uUgGCCCAAU--GGGGGCCGAGGgGg -3'
miRNA:   3'- cAgCGGGUUGuaUUUCUGGCUCCgCg -5'
3599 5' -52.7 NC_001650.1 + 173071 0.7 0.894337
Target:  5'- -cUGCCCAcucaaccccaugGCcaAUGAAGACCGGGGuUGCu -3'
miRNA:   3'- caGCGGGU------------UG--UAUUUCUGGCUCC-GCG- -5'
3599 5' -52.7 NC_001650.1 + 172963 0.72 0.833885
Target:  5'- --gGCCCAAU--GGGGACCGAGGgGg -3'
miRNA:   3'- cagCGGGUUGuaUUUCUGGCUCCgCg -5'
3599 5' -52.7 NC_001650.1 + 172683 0.66 0.984549
Target:  5'- -cCGCUCAcccuaucagaugGCcaAUAAAGGCCGGGGuUGCu -3'
miRNA:   3'- caGCGGGU------------UG--UAUUUCUGGCUCC-GCG- -5'
3599 5' -52.7 NC_001650.1 + 171451 0.68 0.96423
Target:  5'- -gUGCCCGGCucgggGAAGACCuAGGC-Cg -3'
miRNA:   3'- caGCGGGUUGua---UUUCUGGcUCCGcG- -5'
3599 5' -52.7 NC_001650.1 + 169331 0.67 0.97593
Target:  5'- gGUUGCCgGGCAgauuUAGGGAgUgGGGGUGCa -3'
miRNA:   3'- -CAGCGGgUUGU----AUUUCU-GgCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 168465 0.66 0.987858
Target:  5'- cUC-CCCAuuggcCAUGGAGGCCcuguggGAGGUGCc -3'
miRNA:   3'- cAGcGGGUu----GUAUUUCUGG------CUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 166998 0.67 0.978355
Target:  5'- -gCGCCCcc--UGccGGCCGAGGCGa -3'
miRNA:   3'- caGCGGGuuguAUuuCUGGCUCCGCg -5'
3599 5' -52.7 NC_001650.1 + 165153 0.66 0.98628
Target:  5'- -gCGCCgGACcgGGGaGCCGGGGUGa -3'
miRNA:   3'- caGCGGgUUGuaUUUcUGGCUCCGCg -5'
3599 5' -52.7 NC_001650.1 + 164648 0.67 0.969906
Target:  5'- -cCGCgCGGCAcccgggcucccgGGGGACCGcGGCGCu -3'
miRNA:   3'- caGCGgGUUGUa-----------UUUCUGGCuCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 164401 0.79 0.469935
Target:  5'- cUCGCCCAGCcugAGAGACaggcgCGGGGCGUg -3'
miRNA:   3'- cAGCGGGUUGua-UUUCUG-----GCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 158281 0.75 0.670529
Target:  5'- -aUGCCCAgggGCAUGGcguugucGGGCCGGGGCaGCa -3'
miRNA:   3'- caGCGGGU---UGUAUU-------UCUGGCUCCG-CG- -5'
3599 5' -52.7 NC_001650.1 + 157969 0.67 0.967469
Target:  5'- uUUGCCCGugG-GAGGGCCGGacGCGCc -3'
miRNA:   3'- cAGCGGGUugUaUUUCUGGCUc-CGCG- -5'
3599 5' -52.7 NC_001650.1 + 155589 0.67 0.970494
Target:  5'- -cUGCaCCAGCccccUGGAGGCCGcguaguuGGCGCg -3'
miRNA:   3'- caGCG-GGUUGu---AUUUCUGGCu------CCGCG- -5'
3599 5' -52.7 NC_001650.1 + 155261 0.72 0.825415
Target:  5'- -aCGCCCAGCAgggGAGGAuguuacCCGccAGGUGCc -3'
miRNA:   3'- caGCGGGUUGUa--UUUCU------GGC--UCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.