miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3600 3' -54.4 NC_001650.1 + 134983 0.66 0.967964
Target:  5'- uCCGuGAGGUCUgccucuggggcaucaGggGGCgCCgCCUCCAc -3'
miRNA:   3'- -GGC-UUCCAGAa--------------CuuCUG-GG-GGAGGUu -5'
3600 3' -54.4 NC_001650.1 + 131201 0.66 0.967656
Target:  5'- cCCGguGG-C-UGGAGACCaggCCCUCCGu -3'
miRNA:   3'- -GGCuuCCaGaACUUCUGG---GGGAGGUu -5'
3600 3' -54.4 NC_001650.1 + 129179 0.66 0.967656
Target:  5'- gCCGguGGcCaggUGggGACUCCCcCCGAg -3'
miRNA:   3'- -GGCuuCCaGa--ACuuCUGGGGGaGGUU- -5'
3600 3' -54.4 NC_001650.1 + 156080 0.66 0.964461
Target:  5'- cUCGcAGGcCUcGAGGACCCCggCCAGg -3'
miRNA:   3'- -GGCuUCCaGAaCUUCUGGGGgaGGUU- -5'
3600 3' -54.4 NC_001650.1 + 28126 0.66 0.964461
Target:  5'- cCCGcuauguccAGGUCgUUGuAGGCCCCCgCCAc -3'
miRNA:   3'- -GGCu-------UCCAG-AACuUCUGGGGGaGGUu -5'
3600 3' -54.4 NC_001650.1 + 69266 0.66 0.964461
Target:  5'- gCCGcGAGGUCUcccUGGAGGCCgagggCUUCCAc -3'
miRNA:   3'- -GGC-UUCCAGA---ACUUCUGGg----GGAGGUu -5'
3600 3' -54.4 NC_001650.1 + 177290 0.66 0.961052
Target:  5'- cCCGggGGUCUcaaaugcgGguGGgCCCCUCUu- -3'
miRNA:   3'- -GGCuuCCAGAa-------CuuCUgGGGGAGGuu -5'
3600 3' -54.4 NC_001650.1 + 10583 0.66 0.961052
Target:  5'- cCCGggGGUCUcaaaugcgGguGGgCCCCUCUu- -3'
miRNA:   3'- -GGCuuCCAGAa-------CuuCUgGGGGAGGuu -5'
3600 3' -54.4 NC_001650.1 + 84139 0.66 0.961052
Target:  5'- aCCGGuuucGGUC-UGA--GCCCUCUCCAc -3'
miRNA:   3'- -GGCUu---CCAGaACUucUGGGGGAGGUu -5'
3600 3' -54.4 NC_001650.1 + 130484 0.66 0.961052
Target:  5'- cCCGcGAGGUCUUG---GCCCUcgaCUCCAGg -3'
miRNA:   3'- -GGC-UUCCAGAACuucUGGGG---GAGGUU- -5'
3600 3' -54.4 NC_001650.1 + 109597 0.66 0.957423
Target:  5'- -aGggGGUCUccGAGGAagCCCC-CCAAa -3'
miRNA:   3'- ggCuuCCAGAa-CUUCUg-GGGGaGGUU- -5'
3600 3' -54.4 NC_001650.1 + 154988 0.66 0.957423
Target:  5'- -gGGAGGUCcUGAGcccGGCCaCCCUUCGGg -3'
miRNA:   3'- ggCUUCCAGaACUU---CUGG-GGGAGGUU- -5'
3600 3' -54.4 NC_001650.1 + 87986 0.66 0.957423
Target:  5'- ---uAGGUUggGcGGGCCCCCUCCc- -3'
miRNA:   3'- ggcuUCCAGaaCuUCUGGGGGAGGuu -5'
3600 3' -54.4 NC_001650.1 + 60099 0.67 0.949487
Target:  5'- gCCGAGGGUCUggcccGACCCgCCgcCCGc -3'
miRNA:   3'- -GGCUUCCAGAacuu-CUGGG-GGa-GGUu -5'
3600 3' -54.4 NC_001650.1 + 120983 0.67 0.949487
Target:  5'- uCCGu-GGUCacGGAGACCuCCCUCa-- -3'
miRNA:   3'- -GGCuuCCAGaaCUUCUGG-GGGAGguu -5'
3600 3' -54.4 NC_001650.1 + 24978 0.67 0.935839
Target:  5'- aCCuGGGGUUc--GGGGCCCCCUCCc- -3'
miRNA:   3'- -GGcUUCCAGaacUUCUGGGGGAGGuu -5'
3600 3' -54.4 NC_001650.1 + 23923 0.67 0.935839
Target:  5'- -aGGAGGUCacguuacaGGAGACCCCCgcgUCCu- -3'
miRNA:   3'- ggCUUCCAGaa------CUUCUGGGGG---AGGuu -5'
3600 3' -54.4 NC_001650.1 + 141451 0.68 0.925551
Target:  5'- gCCGAGGG-CgaaccgGggGACCCCgggCUCCc- -3'
miRNA:   3'- -GGCUUCCaGaa----CuuCUGGGG---GAGGuu -5'
3600 3' -54.4 NC_001650.1 + 24369 0.68 0.925012
Target:  5'- cCCGggGGUCUcgGAcgucAGAaaacccaugggguCCCCgUCCAGc -3'
miRNA:   3'- -GGCuuCCAGAa-CU----UCU-------------GGGGgAGGUU- -5'
3600 3' -54.4 NC_001650.1 + 134136 0.68 0.920049
Target:  5'- gCCG-GGGUCUgGggGGCgCCC-CCAGc -3'
miRNA:   3'- -GGCuUCCAGAaCuuCUGgGGGaGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.