miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3601 5' -56.5 NC_001650.1 + 50580 0.66 0.940846
Target:  5'- -cGGUCAGGGccgcccccaccGuGGUcAGGugCUCCCUg -3'
miRNA:   3'- gcCCAGUCCU-----------C-CCAuUUCugGAGGGG- -5'
3601 5' -56.5 NC_001650.1 + 183591 0.66 0.936198
Target:  5'- gGGGUCAGccauauuGGUAGGGAgC-CCCCu -3'
miRNA:   3'- gCCCAGUCcuc----CCAUUUCUgGaGGGG- -5'
3601 5' -56.5 NC_001650.1 + 156336 0.66 0.936198
Target:  5'- aCGGGgggCAGG-GGGU----GCCUCagCCCa -3'
miRNA:   3'- -GCCCa--GUCCuCCCAuuucUGGAG--GGG- -5'
3601 5' -56.5 NC_001650.1 + 56860 0.66 0.936198
Target:  5'- uGGcuacugcgCGGGGGGGUcagcuaGGAGGCCUCuuaCCCg -3'
miRNA:   3'- gCCca------GUCCUCCCA------UUUCUGGAG---GGG- -5'
3601 5' -56.5 NC_001650.1 + 16884 0.66 0.936198
Target:  5'- gGGGUCAGccauauuGGUAGGGAgC-CCCCu -3'
miRNA:   3'- gCCCAGUCcuc----CCAUUUCUgGaGGGG- -5'
3601 5' -56.5 NC_001650.1 + 130669 0.66 0.936198
Target:  5'- aGGGUCAccGGGGgcAAGGCCgCCg- -3'
miRNA:   3'- gCCCAGUccUCCCauUUCUGGaGGgg -5'
3601 5' -56.5 NC_001650.1 + 31248 0.66 0.931822
Target:  5'- aGGGUgGGGcgaAGGGggcGGAGGCCauugccgacgcggagCCCCu -3'
miRNA:   3'- gCCCAgUCC---UCCCa--UUUCUGGa--------------GGGG- -5'
3601 5' -56.5 NC_001650.1 + 27783 0.66 0.931324
Target:  5'- cCGGGa-AGGAGGGc--AGGCCguUCUCCu -3'
miRNA:   3'- -GCCCagUCCUCCCauuUCUGG--AGGGG- -5'
3601 5' -56.5 NC_001650.1 + 143596 0.66 0.931324
Target:  5'- uGGGUaGGGAGGGagcuAGGAgCUCgCUa -3'
miRNA:   3'- gCCCAgUCCUCCCau--UUCUgGAGgGG- -5'
3601 5' -56.5 NC_001650.1 + 48572 0.66 0.931324
Target:  5'- uGGuGUUgAGGAucuugaccaGGGUGAGGGCCgugCCCa -3'
miRNA:   3'- gCC-CAG-UCCU---------CCCAUUUCUGGa--GGGg -5'
3601 5' -56.5 NC_001650.1 + 46476 0.66 0.931324
Target:  5'- uCGGGUCuc-GGGGUcaGAAGuucacccUCUCCCCg -3'
miRNA:   3'- -GCCCAGuccUCCCA--UUUCu------GGAGGGG- -5'
3601 5' -56.5 NC_001650.1 + 88631 0.66 0.926224
Target:  5'- aGGGUCuc--GGGUAGuacucccCCUCCCCg -3'
miRNA:   3'- gCCCAGuccuCCCAUUucu----GGAGGGG- -5'
3601 5' -56.5 NC_001650.1 + 151149 0.66 0.926224
Target:  5'- uGGGUauauccaAGGccAGGGUGAAGgaaACCUaCCCg -3'
miRNA:   3'- gCCCAg------UCC--UCCCAUUUC---UGGAgGGG- -5'
3601 5' -56.5 NC_001650.1 + 171757 0.66 0.926224
Target:  5'- gGGGUCccuccGGGGGUGGGGGCUUCgUUa -3'
miRNA:   3'- gCCCAGuc---CUCCCAUUUCUGGAGgGG- -5'
3601 5' -56.5 NC_001650.1 + 171697 0.66 0.926224
Target:  5'- gGGGUCuuggguaauaguGGGuGGGcuccgGGGGGCCUCCg- -3'
miRNA:   3'- gCCCAG------------UCCuCCCa----UUUCUGGAGGgg -5'
3601 5' -56.5 NC_001650.1 + 117759 0.66 0.926224
Target:  5'- uCGGGuUCAGGGGcgacagccGGUcgGcGcCCUCCCCc -3'
miRNA:   3'- -GCCC-AGUCCUC--------CCAuuU-CuGGAGGGG- -5'
3601 5' -56.5 NC_001650.1 + 61096 0.66 0.926224
Target:  5'- uGGGcccgUCGGGGGagauGGUGauGAGgagcucGCCUCCCCc -3'
miRNA:   3'- gCCC----AGUCCUC----CCAU--UUC------UGGAGGGG- -5'
3601 5' -56.5 NC_001650.1 + 5050 0.66 0.926224
Target:  5'- gGGGUCccuccGGGGGUGGGGGCUUCgUUa -3'
miRNA:   3'- gCCCAGuc---CUCCCAUUUCUGGAGgGG- -5'
3601 5' -56.5 NC_001650.1 + 4990 0.66 0.926224
Target:  5'- uGGGUCuuggguaauaguGGGuGGGcuccgGGGGGCCUCCg- -3'
miRNA:   3'- gCCCAG------------UCCuCCCa----UUUCUGGAGGgg -5'
3601 5' -56.5 NC_001650.1 + 163744 0.66 0.926224
Target:  5'- gGGGaCGGGGGgucuGGUGccGGGCCgCCCCu -3'
miRNA:   3'- gCCCaGUCCUC----CCAUu-UCUGGaGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.