miRNA display CGI


Results 1 - 20 of 279 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3602 3' -57.8 NC_001650.1 + 123824 0.66 0.873317
Target:  5'- uGGCccuGGCCGuGGUgAUcAAGGACa -3'
miRNA:   3'- uCCGcuuCCGGCuCCGgUGuUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 51319 0.66 0.873317
Target:  5'- gGGGaCGguGGCCucGGCCcaGCAccAGGGGCu -3'
miRNA:   3'- -UCC-GCuuCCGGcuCCGG--UGU--UUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 120819 0.66 0.873317
Target:  5'- uGGCGggGGCgGGGGUgcccucGGGCg -3'
miRNA:   3'- uCCGCuuCCGgCUCCGguguuuCCUG- -5'
3602 3' -57.8 NC_001650.1 + 130571 0.66 0.873317
Target:  5'- aGGGCaGGGGCCGuGGagcuCCACGAGuuGGAg -3'
miRNA:   3'- -UCCGcUUCCGGCuCC----GGUGUUU--CCUg -5'
3602 3' -57.8 NC_001650.1 + 89191 0.66 0.873317
Target:  5'- gGGGCGAcgagaucgugAGGC--GGGCCAgGgcGGGCg -3'
miRNA:   3'- -UCCGCU----------UCCGgcUCCGGUgUuuCCUG- -5'
3602 3' -57.8 NC_001650.1 + 70924 0.66 0.873317
Target:  5'- uGGUGAcGGCCGucaGCUACGGGcGGGCc -3'
miRNA:   3'- uCCGCUuCCGGCuc-CGGUGUUU-CCUG- -5'
3602 3' -57.8 NC_001650.1 + 49860 0.66 0.873317
Target:  5'- gGGGC-AAGGCCcacccccAGGCCugGuuguagAGGGGCg -3'
miRNA:   3'- -UCCGcUUCCGGc------UCCGGugU------UUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 89864 0.66 0.873317
Target:  5'- gAGGCGGugcGGGUCGuGGCgAgAGucccuGGACg -3'
miRNA:   3'- -UCCGCU---UCCGGCuCCGgUgUUu----CCUG- -5'
3602 3' -57.8 NC_001650.1 + 29706 0.66 0.873317
Target:  5'- -cGCGGAGuGCCuGGGucacCCACAGcAGGACg -3'
miRNA:   3'- ucCGCUUC-CGGcUCC----GGUGUU-UCCUG- -5'
3602 3' -57.8 NC_001650.1 + 109443 0.66 0.873317
Target:  5'- aAGGUGAacgAGGCCuGcGGCCugGAGaGGCu -3'
miRNA:   3'- -UCCGCU---UCCGG-CuCCGGugUUUcCUG- -5'
3602 3' -57.8 NC_001650.1 + 24032 0.66 0.873317
Target:  5'- gAGGCu--GGCCGucucGGGgCACGAcgucgGGGACg -3'
miRNA:   3'- -UCCGcuuCCGGC----UCCgGUGUU-----UCCUG- -5'
3602 3' -57.8 NC_001650.1 + 22319 0.66 0.872598
Target:  5'- gAGGCGGGcaccuucGGCUGGGGCaACGugcuGGGCc -3'
miRNA:   3'- -UCCGCUU-------CCGGCUCCGgUGUuu--CCUG- -5'
3602 3' -57.8 NC_001650.1 + 133169 0.66 0.868976
Target:  5'- cGGGCGAgcgcggaccaccggaGGGCuCGc-GCCGCGGGGGGa -3'
miRNA:   3'- -UCCGCU---------------UCCG-GCucCGGUGUUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 130758 0.66 0.866041
Target:  5'- gAGGUGGagaagAGGCUGGGGCCcCugguGGAg -3'
miRNA:   3'- -UCCGCU-----UCCGGCUCCGGuGuuu-CCUg -5'
3602 3' -57.8 NC_001650.1 + 78272 0.66 0.866041
Target:  5'- uGGgGAuaGCCGAGGCCAuCAAAaaaGACa -3'
miRNA:   3'- uCCgCUucCGGCUCCGGU-GUUUc--CUG- -5'
3602 3' -57.8 NC_001650.1 + 34719 0.66 0.866041
Target:  5'- gAGGCGAcaAGaUgGAGGCUACGAcgacguGGACg -3'
miRNA:   3'- -UCCGCU--UCcGgCUCCGGUGUUu-----CCUG- -5'
3602 3' -57.8 NC_001650.1 + 52556 0.66 0.866041
Target:  5'- gGGGCGgcGGCgGGGGCguucgaguCGGGGGGu -3'
miRNA:   3'- -UCCGCuuCCGgCUCCGgu------GUUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 124081 0.66 0.866041
Target:  5'- cAGGUGGAcGuGUCaGAGGCCGacGGGGGCg -3'
miRNA:   3'- -UCCGCUU-C-CGG-CUCCGGUguUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 58940 0.66 0.866041
Target:  5'- gGGGCGcggGAGGCCcggGAGGCgGCGgcGG-Cu -3'
miRNA:   3'- -UCCGC---UUCCGG---CUCCGgUGUuuCCuG- -5'
3602 3' -57.8 NC_001650.1 + 87047 0.66 0.866041
Target:  5'- cAGGCaGAAGaGCUGGcaguuGGCCAgcAGGGGCu -3'
miRNA:   3'- -UCCG-CUUC-CGGCU-----CCGGUguUUCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.