miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3602 5' -66.6 NC_001650.1 + 138818 0.66 0.546696
Target:  5'- gGUcCCCCUCUCGGuugcGCGGGUCaacucccaUCC-CCa -3'
miRNA:   3'- -CGcGGGGGGAGCC----CGCCCAG--------AGGcGG- -5'
3602 5' -66.6 NC_001650.1 + 76213 0.66 0.537645
Target:  5'- gGCGUCUCCCUgGGacGCaGcGUCgaugagCCGCCg -3'
miRNA:   3'- -CGCGGGGGGAgCC--CGcC-CAGa-----GGCGG- -5'
3602 5' -66.6 NC_001650.1 + 145912 0.66 0.537645
Target:  5'- uGUGCCaguuCUacguggCGGGCGGGgagcUCUCCuGCCa -3'
miRNA:   3'- -CGCGGg---GGga----GCCCGCCC----AGAGG-CGG- -5'
3602 5' -66.6 NC_001650.1 + 30896 0.66 0.536743
Target:  5'- cCGCCCCCCUcccgcucgccccgCGGcGCGcGcgUCCGCCc -3'
miRNA:   3'- cGCGGGGGGA-------------GCC-CGCcCagAGGCGG- -5'
3602 5' -66.6 NC_001650.1 + 131884 0.66 0.532239
Target:  5'- cGCGCCCCuCUUcccucccaaggaggaCGGGCGGGccagggcgggcuUC-CUGCUg -3'
miRNA:   3'- -CGCGGGG-GGA---------------GCCCGCCC------------AGaGGCGG- -5'
3602 5' -66.6 NC_001650.1 + 170364 0.66 0.528646
Target:  5'- cCGUCCCCgUCacgGGGCGucccgCUCUGCCa -3'
miRNA:   3'- cGCGGGGGgAG---CCCGCcca--GAGGCGG- -5'
3602 5' -66.6 NC_001650.1 + 128473 0.66 0.528646
Target:  5'- uGgGCcccaCCCCCUCGGGCacGGG-C-CCGUa -3'
miRNA:   3'- -CgCG----GGGGGAGCCCG--CCCaGaGGCGg -5'
3602 5' -66.6 NC_001650.1 + 3657 0.66 0.528646
Target:  5'- cCGUCCCCgUCacgGGGCGucccgCUCUGCCa -3'
miRNA:   3'- cGCGGGGGgAG---CCCGCcca--GAGGCGG- -5'
3602 5' -66.6 NC_001650.1 + 68815 0.66 0.528646
Target:  5'- gGgGCCCUCgCUCgagGGGCGGGg---CGCCu -3'
miRNA:   3'- -CgCGGGGG-GAG---CCCGCCCagagGCGG- -5'
3602 5' -66.6 NC_001650.1 + 134122 0.66 0.527749
Target:  5'- gGCGCCCCCagcuguaCUCuGGGCGccgcGGUCccaggggCgGCCu -3'
miRNA:   3'- -CGCGGGGG-------GAG-CCCGC----CCAGa------GgCGG- -5'
3602 5' -66.6 NC_001650.1 + 109473 0.66 0.520594
Target:  5'- gGCGCCCCCCacuaucgccaccccgCGGGgaaGGGggguuaugauUCUCaGCCc -3'
miRNA:   3'- -CGCGGGGGGa--------------GCCCg--CCC----------AGAGgCGG- -5'
3602 5' -66.6 NC_001650.1 + 51089 0.66 0.519702
Target:  5'- -aGCCCCCgcgCUCGaaGCGGGgcgugcgCUgCGCCa -3'
miRNA:   3'- cgCGGGGG---GAGCc-CGCCCa------GAgGCGG- -5'
3602 5' -66.6 NC_001650.1 + 134883 0.66 0.519702
Target:  5'- cCGCCCCCCgagaGGC-GGUCaggUCGCCc -3'
miRNA:   3'- cGCGGGGGGagc-CCGcCCAGa--GGCGG- -5'
3602 5' -66.6 NC_001650.1 + 141929 0.66 0.519702
Target:  5'- -aGCCUUCCUCGcGGCaGGGgggcaaaccccCUCgGCCg -3'
miRNA:   3'- cgCGGGGGGAGC-CCG-CCCa----------GAGgCGG- -5'
3602 5' -66.6 NC_001650.1 + 59131 0.66 0.510819
Target:  5'- cGCGCCCCaguCUaucUGGGCGGGU--UCGUg -3'
miRNA:   3'- -CGCGGGGg--GA---GCCCGCCCAgaGGCGg -5'
3602 5' -66.6 NC_001650.1 + 58178 0.66 0.510819
Target:  5'- -gGCUgCCg-UGGGaGGGUCUUCGCCg -3'
miRNA:   3'- cgCGGgGGgaGCCCgCCCAGAGGCGG- -5'
3602 5' -66.6 NC_001650.1 + 49882 0.66 0.510819
Target:  5'- -gGCCCCUCgccaUCaGGCGGG-CgaccuggCCGCCc -3'
miRNA:   3'- cgCGGGGGG----AGcCCGCCCaGa------GGCGG- -5'
3602 5' -66.6 NC_001650.1 + 102533 0.66 0.508167
Target:  5'- -gGUCCCCCgggaucugcUGGGCGGGUC-CCauaaaguacagagcGCCc -3'
miRNA:   3'- cgCGGGGGGa--------GCCCGCCCAGaGG--------------CGG- -5'
3602 5' -66.6 NC_001650.1 + 132213 0.66 0.502
Target:  5'- gGUGCCUgCUgc--GCGGcGUCUCCGCCc -3'
miRNA:   3'- -CGCGGGgGGagccCGCC-CAGAGGCGG- -5'
3602 5' -66.6 NC_001650.1 + 22837 0.66 0.502
Target:  5'- cGCGCCCCCCgCGcGCuGGGggcgCUgaaagaagUCGCCc -3'
miRNA:   3'- -CGCGGGGGGaGCcCG-CCCa---GA--------GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.