miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3606 3' -63.3 NC_001650.1 + 183452 0.67 0.576803
Target:  5'- gGGU-GGCCAucuUGGUGGGgUgGCaucuugguggggUGGCCa -3'
miRNA:   3'- -CCAuCCGGU---ACCGCCCgGgCG------------ACCGG- -5'
3606 3' -63.3 NC_001650.1 + 182978 0.76 0.163862
Target:  5'- aGGUGGGCCAccuuuaaggugGGCGGGUaaGCgggUGGCCa -3'
miRNA:   3'- -CCAUCCGGUa----------CCGCCCGggCG---ACCGG- -5'
3606 3' -63.3 NC_001650.1 + 182250 0.73 0.266548
Target:  5'- aGGUGGGCUGUugcucuGUGGGCCgguUGUUGGCCg -3'
miRNA:   3'- -CCAUCCGGUAc-----CGCCCGG---GCGACCGG- -5'
3606 3' -63.3 NC_001650.1 + 181984 0.7 0.388149
Target:  5'- cGGgcgGGGCCGUcccuucccccccaGC-GGCCCGCUGGCa -3'
miRNA:   3'- -CCa--UCCGGUAc------------CGcCCGGGCGACCGg -5'
3606 3' -63.3 NC_001650.1 + 180922 0.67 0.595906
Target:  5'- aGGUGGGCg--GGCGGGCggGCaGGUg -3'
miRNA:   3'- -CCAUCCGguaCCGCCCGggCGaCCGg -5'
3606 3' -63.3 NC_001650.1 + 178692 0.67 0.561619
Target:  5'- uGUGGGCacgggggucugagugCAUGG-GGGuCCCGgUGGUCg -3'
miRNA:   3'- cCAUCCG---------------GUACCgCCC-GGGCgACCGG- -5'
3606 3' -63.3 NC_001650.1 + 178341 0.69 0.4491
Target:  5'- gGGUGGGCUG-GGUGGcGCgCgGCgagagGGCCg -3'
miRNA:   3'- -CCAUCCGGUaCCGCC-CG-GgCGa----CCGG- -5'
3606 3' -63.3 NC_001650.1 + 175524 0.66 0.605496
Target:  5'- uGGUGGGU-GUGG-GGGUCCuugggauugggGUUGGCCg -3'
miRNA:   3'- -CCAUCCGgUACCgCCCGGG-----------CGACCGG- -5'
3606 3' -63.3 NC_001650.1 + 174971 0.72 0.324492
Target:  5'- aGGcggGGGCCaAUGGgGGGCCUGUgGGUa -3'
miRNA:   3'- -CCa--UCCGG-UACCgCCCGGGCGaCCGg -5'
3606 3' -63.3 NC_001650.1 + 172035 0.66 0.66318
Target:  5'- gGGgcGGCCAcgUGGUGGGgagGC-GGCCa -3'
miRNA:   3'- -CCauCCGGU--ACCGCCCgggCGaCCGG- -5'
3606 3' -63.3 NC_001650.1 + 171715 0.66 0.638195
Target:  5'- gGGUGGGCUccGGgGGGCCUccgugugucugauagGCggacgggGGUCc -3'
miRNA:   3'- -CCAUCCGGuaCCgCCCGGG---------------CGa------CCGG- -5'
3606 3' -63.3 NC_001650.1 + 171477 0.66 0.611259
Target:  5'- cGGUAGGCCucugcaaauccaGGCcgGGGCUCGagggguaGGCCu -3'
miRNA:   3'- -CCAUCCGGua----------CCG--CCCGGGCga-----CCGG- -5'
3606 3' -63.3 NC_001650.1 + 171102 0.7 0.40732
Target:  5'- cGGUAGGaCCAUauaGGGCCCGUccaaugggaGGCCg -3'
miRNA:   3'- -CCAUCC-GGUAccgCCCGGGCGa--------CCGG- -5'
3606 3' -63.3 NC_001650.1 + 170923 0.67 0.58634
Target:  5'- uGGgGGGUCAUGGgGGGUCUuagGUaaUGGUCa -3'
miRNA:   3'- -CCaUCCGGUACCgCCCGGG---CG--ACCGG- -5'
3606 3' -63.3 NC_001650.1 + 169808 0.66 0.624722
Target:  5'- aGGgAGGCCAuauUGGauucuGGCCC-CUGGCa -3'
miRNA:   3'- -CCaUCCGGU---ACCgc---CCGGGcGACCGg -5'
3606 3' -63.3 NC_001650.1 + 169801 0.66 0.634346
Target:  5'- gGGUGGGCUAgggGGUGGGCauaUggggugagguagGCUGuuGCCa -3'
miRNA:   3'- -CCAUCCGGUa--CCGCCCGg--G------------CGAC--CGG- -5'
3606 3' -63.3 NC_001650.1 + 165111 0.66 0.605496
Target:  5'- cGGUgGGGCCcggggggugggGUGGCGgcGGCgCGCUcuagucagGGCCu -3'
miRNA:   3'- -CCA-UCCGG-----------UACCGC--CCGgGCGA--------CCGG- -5'
3606 3' -63.3 NC_001650.1 + 163295 0.66 0.615103
Target:  5'- cGGU-GGCCAUGGUGGacaCCCuccucacgGC-GGCCc -3'
miRNA:   3'- -CCAuCCGGUACCGCCc--GGG--------CGaCCGG- -5'
3606 3' -63.3 NC_001650.1 + 158372 0.66 0.66318
Target:  5'- gGGUcAGcGCgGUGGCGGGuaccucucCCCuCUgGGCCg -3'
miRNA:   3'- -CCA-UC-CGgUACCGCCC--------GGGcGA-CCGG- -5'
3606 3' -63.3 NC_001650.1 + 157590 0.66 0.634346
Target:  5'- --aAGGCC---GCGGGCCUcaacgGCUGcGCCu -3'
miRNA:   3'- ccaUCCGGuacCGCCCGGG-----CGAC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.