miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3606 5' -59.4 NC_001650.1 + 25238 1.07 0.002161
Target:  5'- gUAGAACAUCGAGGCCGCCUGGCCCGAg -3'
miRNA:   3'- -AUCUUGUAGCUCCGGCGGACCGGGCU- -5'
3606 5' -59.4 NC_001650.1 + 173985 0.67 0.745025
Target:  5'- uUAGGGCAUUG-GGCaauaaaGCCcaUGGCCCa- -3'
miRNA:   3'- -AUCUUGUAGCuCCGg-----CGG--ACCGGGcu -5'
3606 5' -59.4 NC_001650.1 + 39848 0.67 0.745025
Target:  5'- cAGAGCua-----CCGCCUGGCCCGGg -3'
miRNA:   3'- aUCUUGuagcuccGGCGGACCGGGCU- -5'
3606 5' -59.4 NC_001650.1 + 51029 0.66 0.80833
Target:  5'- -cGcGCGcCGGGGCCGCg-GuGCCCGAg -3'
miRNA:   3'- auCuUGUaGCUCCGGCGgaC-CGGGCU- -5'
3606 5' -59.4 NC_001650.1 + 59052 0.7 0.567918
Target:  5'- -cGGACGUgGGGGCUcaucuGCCUcucccgGGCCCGAu -3'
miRNA:   3'- auCUUGUAgCUCCGG-----CGGA------CCGGGCU- -5'
3606 5' -59.4 NC_001650.1 + 53898 0.69 0.637374
Target:  5'- -----gGUCGAGaGCCGgCUGGCCCu- -3'
miRNA:   3'- aucuugUAGCUC-CGGCgGACCGGGcu -5'
3606 5' -59.4 NC_001650.1 + 173763 0.68 0.705627
Target:  5'- uUAGGGCAUgGGGcaauaaaGCCcCCUGGCCCa- -3'
miRNA:   3'- -AUCUUGUAgCUC-------CGGcGGACCGGGcu -5'
3606 5' -59.4 NC_001650.1 + 7056 0.68 0.705627
Target:  5'- uUAGGGCAUgGGGcaauaaaGCCcCCUGGCCCa- -3'
miRNA:   3'- -AUCUUGUAgCUC-------CGGcGGACCGGGcu -5'
3606 5' -59.4 NC_001650.1 + 6301 0.67 0.716318
Target:  5'- gGGAcucgaugcauauGCAUCGGGGCCuugggcaauaaaGCCccgGGCCCa- -3'
miRNA:   3'- aUCU------------UGUAGCUCCGG------------CGGa--CCGGGcu -5'
3606 5' -59.4 NC_001650.1 + 174097 0.67 0.745025
Target:  5'- uUAGGGCAUUG-GGCaauaaaGCCcaUGGCCCa- -3'
miRNA:   3'- -AUCUUGUAGCuCCGg-----CGG--ACCGGGcu -5'
3606 5' -59.4 NC_001650.1 + 145988 0.67 0.716318
Target:  5'- gAGAGCAg-GAGGCucguccucacCGCCUGGaaCCCGGc -3'
miRNA:   3'- aUCUUGUagCUCCG----------GCGGACC--GGGCU- -5'
3606 5' -59.4 NC_001650.1 + 173008 0.67 0.716318
Target:  5'- gGGAcucgaugcauauGCAUCGGGGCCuugggcaauaaaGCCccgGGCCCa- -3'
miRNA:   3'- aUCU------------UGUAGCUCCGG------------CGGa--CCGGGcu -5'
3606 5' -59.4 NC_001650.1 + 142693 0.72 0.436871
Target:  5'- cAGcAGC-UCgGAGGCCGCCacgGGCCUGAa -3'
miRNA:   3'- aUC-UUGuAG-CUCCGGCGGa--CCGGGCU- -5'
3606 5' -59.4 NC_001650.1 + 132837 0.67 0.725967
Target:  5'- gGGAugGggGAGGCCGCCUgcagguugggGGCCa-- -3'
miRNA:   3'- aUCUugUagCUCCGGCGGA----------CCGGgcu -5'
3606 5' -59.4 NC_001650.1 + 155567 0.72 0.436871
Target:  5'- aUAGAGC-UCGAGGCCaacGCCUccgagcuGCCCGAg -3'
miRNA:   3'- -AUCUUGuAGCUCCGG---CGGAc------CGGGCU- -5'
3606 5' -59.4 NC_001650.1 + 143169 0.68 0.706602
Target:  5'- gAGAGCAUgcauGGCC-CCUGGCaCCGGu -3'
miRNA:   3'- aUCUUGUAgcu-CCGGcGGACCG-GGCU- -5'
3606 5' -59.4 NC_001650.1 + 35525 0.67 0.735538
Target:  5'- gUGGAAgGUCaGGGCCacaggcgugugGcCCUGGCCCGc -3'
miRNA:   3'- -AUCUUgUAGcUCCGG-----------C-GGACCGGGCu -5'
3606 5' -59.4 NC_001650.1 + 173395 0.67 0.745025
Target:  5'- uUAGGGCAUUG-GGCaauaaaGCCcaUGGCCCa- -3'
miRNA:   3'- -AUCUUGUAGCuCCGg-----CGG--ACCGGGcu -5'
3606 5' -59.4 NC_001650.1 + 111404 0.71 0.509944
Target:  5'- gGGGGCG-CG-GGCCGCCUgagccgccugGGCCUGAc -3'
miRNA:   3'- aUCUUGUaGCuCCGGCGGA----------CCGGGCU- -5'
3606 5' -59.4 NC_001650.1 + 52868 0.68 0.656294
Target:  5'- cUGGGGCGauuccgcUCGAGGCUcacgGUCUGGCgCGAg -3'
miRNA:   3'- -AUCUUGU-------AGCUCCGG----CGGACCGgGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.