miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3608 3' -60.2 NC_001650.1 + 155587 0.66 0.780105
Target:  5'- cCCugCACCAGCccccuggaGGCCGCGuaGUugGc -3'
miRNA:   3'- uGGugGUGGUCGa-------CCGGCGC--CAugUc -5'
3608 3' -60.2 NC_001650.1 + 50758 0.66 0.780105
Target:  5'- cGCCGCCACCAcCUGcUCGCaGG-ACGGg -3'
miRNA:   3'- -UGGUGGUGGUcGACcGGCG-CCaUGUC- -5'
3608 3' -60.2 NC_001650.1 + 90187 0.66 0.780105
Target:  5'- cGCUGgCGCCccCUGGCgGCGGUGgGGa -3'
miRNA:   3'- -UGGUgGUGGucGACCGgCGCCAUgUC- -5'
3608 3' -60.2 NC_001650.1 + 102474 0.66 0.780105
Target:  5'- gGCCGC--CCAGgaGGUgGCGGUACc- -3'
miRNA:   3'- -UGGUGguGGUCgaCCGgCGCCAUGuc -5'
3608 3' -60.2 NC_001650.1 + 36980 0.66 0.780105
Target:  5'- uCCACCACCAGCa--CCGgGGUGuugUAGa -3'
miRNA:   3'- uGGUGGUGGUCGaccGGCgCCAU---GUC- -5'
3608 3' -60.2 NC_001650.1 + 73719 0.66 0.780105
Target:  5'- gAUCACCucgcaggugGCgAGCUGGCCGUGGc---- -3'
miRNA:   3'- -UGGUGG---------UGgUCGACCGGCGCCauguc -5'
3608 3' -60.2 NC_001650.1 + 143112 0.66 0.771083
Target:  5'- cGCCcgaGCgCGCCGGCUgcacgGGCCGgGGcgGCGGc -3'
miRNA:   3'- -UGG---UG-GUGGUCGA-----CCGGCgCCa-UGUC- -5'
3608 3' -60.2 NC_001650.1 + 134199 0.66 0.771083
Target:  5'- cACCACCACCAcacacGCcucccCCGCGG-GCAGa -3'
miRNA:   3'- -UGGUGGUGGU-----CGacc--GGCGCCaUGUC- -5'
3608 3' -60.2 NC_001650.1 + 83367 0.66 0.771083
Target:  5'- cACCAUCACCgaguGGCgGGCCGaggcccugccguCGGUAcCAGc -3'
miRNA:   3'- -UGGUGGUGG----UCGaCCGGC------------GCCAU-GUC- -5'
3608 3' -60.2 NC_001650.1 + 45423 0.66 0.771083
Target:  5'- uGCCGCCACgGcGCUgGGCUaGUGG-GCAGg -3'
miRNA:   3'- -UGGUGGUGgU-CGA-CCGG-CGCCaUGUC- -5'
3608 3' -60.2 NC_001650.1 + 102417 0.66 0.764699
Target:  5'- gGCCGCCAucuacgaccugucCCAGCUGcaGCCGUGcGUcgugcccguccagcaGCAGg -3'
miRNA:   3'- -UGGUGGU-------------GGUCGAC--CGGCGC-CA---------------UGUC- -5'
3608 3' -60.2 NC_001650.1 + 27263 0.66 0.761946
Target:  5'- gGCCACgG--AGCUGGCCGUGaGcUACGGc -3'
miRNA:   3'- -UGGUGgUggUCGACCGGCGC-C-AUGUC- -5'
3608 3' -60.2 NC_001650.1 + 22776 0.66 0.761946
Target:  5'- uGCaCGCCAagaUAGC-GGCCGC-GUGCGGg -3'
miRNA:   3'- -UG-GUGGUg--GUCGaCCGGCGcCAUGUC- -5'
3608 3' -60.2 NC_001650.1 + 142339 0.66 0.761946
Target:  5'- gACCuCCACCuucauGGC-GGCCGCGG-ACu- -3'
miRNA:   3'- -UGGuGGUGG-----UCGaCCGGCGCCaUGuc -5'
3608 3' -60.2 NC_001650.1 + 121510 0.66 0.761026
Target:  5'- cACCAgcaucucCCACCGGCUGGUCagggaGGUccuGCGGa -3'
miRNA:   3'- -UGGU-------GGUGGUCGACCGGcg---CCA---UGUC- -5'
3608 3' -60.2 NC_001650.1 + 24236 0.66 0.7527
Target:  5'- uGCCccgagACgGCCAGCcucuUGGCCcucaGGUGCAGg -3'
miRNA:   3'- -UGG-----UGgUGGUCG----ACCGGcg--CCAUGUC- -5'
3608 3' -60.2 NC_001650.1 + 155960 0.66 0.75177
Target:  5'- uGCCugC-CCGGCugcaccgagccccUGGCCGCGcUGCAc -3'
miRNA:   3'- -UGGugGuGGUCG-------------ACCGGCGCcAUGUc -5'
3608 3' -60.2 NC_001650.1 + 142682 0.66 0.743356
Target:  5'- uCCGCCGCCGcGCcGGCCgauaagcggcgaGCGGcgGCGGc -3'
miRNA:   3'- uGGUGGUGGU-CGaCCGG------------CGCCa-UGUC- -5'
3608 3' -60.2 NC_001650.1 + 121571 0.66 0.743356
Target:  5'- uCCGCgACCccCUGGaCCGCGGgggcgGCGGa -3'
miRNA:   3'- uGGUGgUGGucGACC-GGCGCCa----UGUC- -5'
3608 3' -60.2 NC_001650.1 + 75392 0.66 0.73392
Target:  5'- gUCACCuuCAGgauguuccucaUGGCCGCGGUugGGu -3'
miRNA:   3'- uGGUGGugGUCg----------ACCGGCGCCAugUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.