miRNA display CGI


Results 1 - 20 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3608 5' -58.4 NC_001650.1 + 82298 0.66 0.869259
Target:  5'- -cCCGcUCGCCccacCCGCCCCCGUUc--- -3'
miRNA:   3'- gaGGC-AGUGGu---GGUGGGGGCGAuaca -5'
3608 5' -58.4 NC_001650.1 + 129837 0.66 0.869259
Target:  5'- -gCCGcCACCGCCGCCCaguccUCGCccGUGa -3'
miRNA:   3'- gaGGCaGUGGUGGUGGG-----GGCGa-UACa -5'
3608 5' -58.4 NC_001650.1 + 27457 0.66 0.861973
Target:  5'- gCUCCGUgGCCACaCugUCCa-CUAUGg -3'
miRNA:   3'- -GAGGCAgUGGUG-GugGGGgcGAUACa -5'
3608 5' -58.4 NC_001650.1 + 128547 0.66 0.857507
Target:  5'- uCUCCGUCGguCCcccaucaccucgcccACCGCCUCCGCg---- -3'
miRNA:   3'- -GAGGCAGU--GG---------------UGGUGGGGGCGauaca -5'
3608 5' -58.4 NC_001650.1 + 163234 0.66 0.854491
Target:  5'- -aCCGUCugCGCCACUCUCccaccauuuCUGUGUc -3'
miRNA:   3'- gaGGCAGugGUGGUGGGGGc--------GAUACA- -5'
3608 5' -58.4 NC_001650.1 + 88729 0.66 0.838963
Target:  5'- uUCCaGagACCGgCGCCCCCGCUu--- -3'
miRNA:   3'- gAGG-CagUGGUgGUGGGGGCGAuaca -5'
3608 5' -58.4 NC_001650.1 + 72467 0.66 0.83093
Target:  5'- gUCUGUCACguuCAgUAUCCCCGCcAUGUc -3'
miRNA:   3'- gAGGCAGUG---GUgGUGGGGGCGaUACA- -5'
3608 5' -58.4 NC_001650.1 + 121792 0.66 0.83093
Target:  5'- -gCUGcCcuCCGCCGCCCCCGCg--GUc -3'
miRNA:   3'- gaGGCaGu-GGUGGUGGGGGCGauaCA- -5'
3608 5' -58.4 NC_001650.1 + 49811 0.66 0.83093
Target:  5'- gUCCGUgACCAgcaucgaguCCACCUCCGCc---- -3'
miRNA:   3'- gAGGCAgUGGU---------GGUGGGGGCGauaca -5'
3608 5' -58.4 NC_001650.1 + 121088 0.66 0.83093
Target:  5'- -gUUGUCGCgCGCCGCCCCCaGCg---- -3'
miRNA:   3'- gaGGCAGUG-GUGGUGGGGG-CGauaca -5'
3608 5' -58.4 NC_001650.1 + 91367 0.67 0.822727
Target:  5'- cCUCCGcagCAuCCGCagcaGCCCCCGCg---- -3'
miRNA:   3'- -GAGGCa--GU-GGUGg---UGGGGGCGauaca -5'
3608 5' -58.4 NC_001650.1 + 136490 0.67 0.822727
Target:  5'- -cCCGUCAgCuuCGCCCCCGCc---- -3'
miRNA:   3'- gaGGCAGUgGugGUGGGGGCGauaca -5'
3608 5' -58.4 NC_001650.1 + 82922 0.67 0.822727
Target:  5'- --gCGUCAuCCACCGCCCCUaGCUu--- -3'
miRNA:   3'- gagGCAGU-GGUGGUGGGGG-CGAuaca -5'
3608 5' -58.4 NC_001650.1 + 78149 0.67 0.822727
Target:  5'- -gCC-UCGCaGCCGCCCCCGCUc--- -3'
miRNA:   3'- gaGGcAGUGgUGGUGGGGGCGAuaca -5'
3608 5' -58.4 NC_001650.1 + 155637 0.67 0.805837
Target:  5'- -cCCGcUCACCACgAgCCCCGCg---- -3'
miRNA:   3'- gaGGC-AGUGGUGgUgGGGGCGauaca -5'
3608 5' -58.4 NC_001650.1 + 155240 0.67 0.805837
Target:  5'- cCUCgGcCGCCuACCACCCCUgGCaGUGg -3'
miRNA:   3'- -GAGgCaGUGG-UGGUGGGGG-CGaUACa -5'
3608 5' -58.4 NC_001650.1 + 130132 0.67 0.805837
Target:  5'- -cUCGUaCACguCCGCCCCCuCUAUGg -3'
miRNA:   3'- gaGGCA-GUGguGGUGGGGGcGAUACa -5'
3608 5' -58.4 NC_001650.1 + 56970 0.67 0.797165
Target:  5'- aUCUa-UACCAagGCCCCCGCUGUGa -3'
miRNA:   3'- gAGGcaGUGGUggUGGGGGCGAUACa -5'
3608 5' -58.4 NC_001650.1 + 46292 0.67 0.797165
Target:  5'- aCUCC-UCGCgACCuCCCCCGUUGc-- -3'
miRNA:   3'- -GAGGcAGUGgUGGuGGGGGCGAUaca -5'
3608 5' -58.4 NC_001650.1 + 65814 0.67 0.788353
Target:  5'- -cCCGUCGCC-CCAUCCuCCGCc---- -3'
miRNA:   3'- gaGGCAGUGGuGGUGGG-GGCGauaca -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.