miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3610 3' -54.6 NC_001650.1 + 71996 0.66 0.972537
Target:  5'- gGGGCGGCCGucUCCA-----AGGAGGu -3'
miRNA:   3'- -CCCGCCGGCucAGGUgcaguUUCUUC- -5'
3610 3' -54.6 NC_001650.1 + 181410 0.66 0.969724
Target:  5'- cGGCGGgCGAG-CgAgGUgAGGGAAGg -3'
miRNA:   3'- cCCGCCgGCUCaGgUgCAgUUUCUUC- -5'
3610 3' -54.6 NC_001650.1 + 54929 0.66 0.969724
Target:  5'- cGGGCGGCCGGGggauUUUugG-CAGGGc-- -3'
miRNA:   3'- -CCCGCCGGCUC----AGGugCaGUUUCuuc -5'
3610 3' -54.6 NC_001650.1 + 14703 0.66 0.969724
Target:  5'- cGGCGGgCGAG-CgAgGUgAGGGAAGg -3'
miRNA:   3'- cCCGCCgGCUCaGgUgCAgUUUCUUC- -5'
3610 3' -54.6 NC_001650.1 + 128527 0.66 0.969724
Target:  5'- uGGCGGCCGcgcagcAGcUCACGUaCAuGGggGg -3'
miRNA:   3'- cCCGCCGGC------UCaGGUGCA-GUuUCuuC- -5'
3610 3' -54.6 NC_001650.1 + 80914 0.66 0.969724
Target:  5'- cGGgGGaCCGAGUggAUGUCAGGGAc- -3'
miRNA:   3'- cCCgCC-GGCUCAggUGCAGUUUCUuc -5'
3610 3' -54.6 NC_001650.1 + 23759 0.66 0.969724
Target:  5'- cGGGgGGCgGAGaCC-CGccCGAGGggGg -3'
miRNA:   3'- -CCCgCCGgCUCaGGuGCa-GUUUCuuC- -5'
3610 3' -54.6 NC_001650.1 + 31232 0.66 0.969724
Target:  5'- gGGGCgGGCCGGGaCgAgGguggggCGAAGggGg -3'
miRNA:   3'- -CCCG-CCGGCUCaGgUgCa-----GUUUCuuC- -5'
3610 3' -54.6 NC_001650.1 + 147672 0.66 0.969724
Target:  5'- -cGCGGCCGGGagCCGC-UCuGGGggGu -3'
miRNA:   3'- ccCGCCGGCUCa-GGUGcAGuUUCuuC- -5'
3610 3' -54.6 NC_001650.1 + 59829 0.66 0.969724
Target:  5'- aGGUGGcCCGAGaCCAUGagGuAGAGGa -3'
miRNA:   3'- cCCGCC-GGCUCaGGUGCagUuUCUUC- -5'
3610 3' -54.6 NC_001650.1 + 54399 0.66 0.969724
Target:  5'- uGGGCGGCCcggGAGcUCCACcggCGAcuGGAc- -3'
miRNA:   3'- -CCCGCCGG---CUC-AGGUGca-GUU--UCUuc -5'
3610 3' -54.6 NC_001650.1 + 108165 0.66 0.969432
Target:  5'- gGGGCGGguccCCGAGUucucugcCUACGUgGgcAAGAAGc -3'
miRNA:   3'- -CCCGCC----GGCUCA-------GGUGCAgU--UUCUUC- -5'
3610 3' -54.6 NC_001650.1 + 83298 0.66 0.966711
Target:  5'- aGGGaGaGCCGcguGUCCGCGUacuguuuuuUAAAGAGGg -3'
miRNA:   3'- -CCCgC-CGGCu--CAGGUGCA---------GUUUCUUC- -5'
3610 3' -54.6 NC_001650.1 + 38325 0.66 0.966711
Target:  5'- uGGGgGGCUGGGcuguacgCCcuCGUgAGAGAGGa -3'
miRNA:   3'- -CCCgCCGGCUCa------GGu-GCAgUUUCUUC- -5'
3610 3' -54.6 NC_001650.1 + 96239 0.66 0.966711
Target:  5'- uGGGCGcccCCGGGUCgCugGUCAuccuGGGu- -3'
miRNA:   3'- -CCCGCc--GGCUCAG-GugCAGUu---UCUuc -5'
3610 3' -54.6 NC_001650.1 + 51029 0.66 0.966711
Target:  5'- -cGCGcGCCGGGgCCGCGgugcccgaGAAGAAGa -3'
miRNA:   3'- ccCGC-CGGCUCaGGUGCag------UUUCUUC- -5'
3610 3' -54.6 NC_001650.1 + 45308 0.66 0.966711
Target:  5'- -cGCGGCCGcaagccgcAGcCCGC-UCAGGGGAGa -3'
miRNA:   3'- ccCGCCGGC--------UCaGGUGcAGUUUCUUC- -5'
3610 3' -54.6 NC_001650.1 + 75529 0.66 0.963493
Target:  5'- -uGCGcGCCucGUCCGCGgccgCAGGGggGc -3'
miRNA:   3'- ccCGC-CGGcuCAGGUGCa---GUUUCuuC- -5'
3610 3' -54.6 NC_001650.1 + 24075 0.66 0.963493
Target:  5'- uGGGCggcccuGGCCGAGauggCCAUGgCGGGGAu- -3'
miRNA:   3'- -CCCG------CCGGCUCa---GGUGCaGUUUCUuc -5'
3610 3' -54.6 NC_001650.1 + 122954 0.66 0.963493
Target:  5'- aGGGCc-CCGaAGUgCCugGUCAGGGAGa -3'
miRNA:   3'- -CCCGccGGC-UCA-GGugCAGUUUCUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.