miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3611 3' -60.8 NC_001650.1 + 132830 0.66 0.760204
Target:  5'- gGGagGCCGCCugCAGGUUgGGGGccagcGCCUCc -3'
miRNA:   3'- -UCagUGGCGG--GUCCAGgCUCU-----CGGAG- -5'
3611 3' -60.8 NC_001650.1 + 147202 0.66 0.760204
Target:  5'- -cUCGCgCGCCCucugauuGGUCC-AGAGCCcCg -3'
miRNA:   3'- ucAGUG-GCGGGu------CCAGGcUCUCGGaG- -5'
3611 3' -60.8 NC_001650.1 + 164653 0.66 0.760204
Target:  5'- cAGcC-CCuCCCGGGUgagCCGGGGGUCUCu -3'
miRNA:   3'- -UCaGuGGcGGGUCCA---GGCUCUCGGAG- -5'
3611 3' -60.8 NC_001650.1 + 165690 0.66 0.760204
Target:  5'- aAGcUCACCGcCCCGGGugcuUCCucGGGCCg- -3'
miRNA:   3'- -UC-AGUGGC-GGGUCC----AGGcuCUCGGag -5'
3611 3' -60.8 NC_001650.1 + 146668 0.66 0.760204
Target:  5'- ---gGCCGCCUAGGgCCGcGGGUCUa -3'
miRNA:   3'- ucagUGGCGGGUCCaGGCuCUCGGAg -5'
3611 3' -60.8 NC_001650.1 + 96462 0.66 0.758372
Target:  5'- gGGUCGCCaCCCAGGaugaccagcgacCCGGGGGCg-- -3'
miRNA:   3'- -UCAGUGGcGGGUCCa-----------GGCUCUCGgag -5'
3611 3' -60.8 NC_001650.1 + 145450 0.66 0.757455
Target:  5'- aAGUCAucuauguccuccacCCGCCuCAGGaUCCu-GAGCCUg -3'
miRNA:   3'- -UCAGU--------------GGCGG-GUCC-AGGcuCUCGGAg -5'
3611 3' -60.8 NC_001650.1 + 23646 0.66 0.754696
Target:  5'- cAGUCAuCCGgcaccuggggggucuCCCAGGUCC-AGGGCUccaUCg -3'
miRNA:   3'- -UCAGU-GGC---------------GGGUCCAGGcUCUCGG---AG- -5'
3611 3' -60.8 NC_001650.1 + 155795 0.66 0.751004
Target:  5'- --cCGCCGCCCGGGggaCCuguaGAGGGUCa- -3'
miRNA:   3'- ucaGUGGCGGGUCCa--GG----CUCUCGGag -5'
3611 3' -60.8 NC_001650.1 + 142980 0.66 0.751004
Target:  5'- cGGcCGCCGCCCuGGggaaacgCCcugGAGAccGCCUCc -3'
miRNA:   3'- -UCaGUGGCGGGuCCa------GG---CUCU--CGGAG- -5'
3611 3' -60.8 NC_001650.1 + 141664 0.66 0.751004
Target:  5'- --aCACC-CCCAGGccCCGAGGcCCUCc -3'
miRNA:   3'- ucaGUGGcGGGUCCa-GGCUCUcGGAG- -5'
3611 3' -60.8 NC_001650.1 + 64704 0.66 0.748224
Target:  5'- gGGUCGCgUGCUgGGGUCUGAGAacauaguugacgcuGCCa- -3'
miRNA:   3'- -UCAGUG-GCGGgUCCAGGCUCU--------------CGGag -5'
3611 3' -60.8 NC_001650.1 + 142890 0.66 0.741707
Target:  5'- cGcCGCCGCCCcGGcCCGuGcAGCCg- -3'
miRNA:   3'- uCaGUGGCGGGuCCaGGCuC-UCGGag -5'
3611 3' -60.8 NC_001650.1 + 167410 0.66 0.741707
Target:  5'- ---gGCCGCCCAuuGG-CCGAGAGgaguccCCUCc -3'
miRNA:   3'- ucagUGGCGGGU--CCaGGCUCUC------GGAG- -5'
3611 3' -60.8 NC_001650.1 + 703 0.66 0.741707
Target:  5'- ---gGCCGCCCAuuGG-CCGAGAGgaguccCCUCc -3'
miRNA:   3'- ucagUGGCGGGU--CCaGGCUCUC------GGAG- -5'
3611 3' -60.8 NC_001650.1 + 27454 0.66 0.741707
Target:  5'- cGGUgcugUACCugGCCCGGGUCCaGAagcaGGCCUCc -3'
miRNA:   3'- -UCA----GUGG--CGGGUCCAGG-CUc---UCGGAG- -5'
3611 3' -60.8 NC_001650.1 + 131432 0.66 0.732321
Target:  5'- gGGUC-UCGgggaCCGGGUCCacgGAGGGCCUg -3'
miRNA:   3'- -UCAGuGGCg---GGUCCAGG---CUCUCGGAg -5'
3611 3' -60.8 NC_001650.1 + 121401 0.66 0.726651
Target:  5'- --cCACCGUCCgccgggcgcacccguAGGUCUGgucguggagcAGGGCCUCg -3'
miRNA:   3'- ucaGUGGCGGG---------------UCCAGGC----------UCUCGGAG- -5'
3611 3' -60.8 NC_001650.1 + 134145 0.66 0.722856
Target:  5'- cGGcCGCCuGCCgGGGUCUGGGGGgCg- -3'
miRNA:   3'- -UCaGUGG-CGGgUCCAGGCUCUCgGag -5'
3611 3' -60.8 NC_001650.1 + 27610 0.66 0.717142
Target:  5'- cGUgCACCGCCUgcuuggcguuaaacuGGGUC--AGGGCCUCc -3'
miRNA:   3'- uCA-GUGGCGGG---------------UCCAGgcUCUCGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.