miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3612 3' -62.6 NC_001650.1 + 24490 0.65 0.66682
Target:  5'- gCCCCaacaagaaacacagGGUgGcGGUCCUGCUCCUGcccgGCu -3'
miRNA:   3'- -GGGG--------------UCGgU-CCGGGACGAGGACa---CGu -5'
3612 3' -62.6 NC_001650.1 + 140460 0.65 0.664873
Target:  5'- uCCCgGGCCGGGCUgagcccaggguuacaUGCUCCcggcggcuuuagggGUGCAu -3'
miRNA:   3'- -GGGgUCGGUCCGGg--------------ACGAGGa-------------CACGU- -5'
3612 3' -62.6 NC_001650.1 + 1759 0.66 0.660002
Target:  5'- uCCCCauuGGCCauggAGGCCCUGUgggagGUGCc -3'
miRNA:   3'- -GGGG---UCGG----UCCGGGACGagga-CACGu -5'
3612 3' -62.6 NC_001650.1 + 67708 0.66 0.660002
Target:  5'- uUCCAGCUgAGGCCCaUGgUCCucgagaUGUGCc -3'
miRNA:   3'- gGGGUCGG-UCCGGG-ACgAGG------ACACGu -5'
3612 3' -62.6 NC_001650.1 + 168466 0.66 0.660002
Target:  5'- uCCCCauuGGCCauggAGGCCCUGUgggagGUGCc -3'
miRNA:   3'- -GGGG---UCGG----UCCGGGACGagga-CACGu -5'
3612 3' -62.6 NC_001650.1 + 142179 0.66 0.659027
Target:  5'- gUCCCacgcugacGGCCAcccacgcGGCgCUGCUCgaGUGCGc -3'
miRNA:   3'- -GGGG--------UCGGU-------CCGgGACGAGgaCACGU- -5'
3612 3' -62.6 NC_001650.1 + 45377 0.66 0.659027
Target:  5'- aCCCGGCCcaGCCCguacaGUUCCccuagggUGUGCAg -3'
miRNA:   3'- gGGGUCGGucCGGGa----CGAGG-------ACACGU- -5'
3612 3' -62.6 NC_001650.1 + 88744 0.66 0.650246
Target:  5'- cCCCCGGCCggcaagcggggcAGGCCgacGCgCCUGcGCAu -3'
miRNA:   3'- -GGGGUCGG------------UCCGGga-CGaGGACaCGU- -5'
3612 3' -62.6 NC_001650.1 + 22149 0.66 0.650246
Target:  5'- aCCCCuuCaacGGCCUgcuggGCUaCCUGUGCAg -3'
miRNA:   3'- -GGGGucGgu-CCGGGa----CGA-GGACACGU- -5'
3612 3' -62.6 NC_001650.1 + 131350 0.66 0.650246
Target:  5'- gCCCGGCCggGGGCCCUGUacgggacUCUG-GCc -3'
miRNA:   3'- gGGGUCGG--UCCGGGACGa------GGACaCGu -5'
3612 3' -62.6 NC_001650.1 + 48315 0.66 0.644385
Target:  5'- cCCCUGGCCAuccugcuguacaccGCCCUGCaCCUGUccacGCAc -3'
miRNA:   3'- -GGGGUCGGUc-------------CGGGACGaGGACA----CGU- -5'
3612 3' -62.6 NC_001650.1 + 26935 0.66 0.640477
Target:  5'- gCCCCuccaGGCCGGGCCCgGCgaagaugggCUUGaaGCAg -3'
miRNA:   3'- -GGGG----UCGGUCCGGGaCGa--------GGACa-CGU- -5'
3612 3' -62.6 NC_001650.1 + 24916 0.66 0.640477
Target:  5'- cCCCCgcgguGGCCuuuAGGaCCCUGCgggggUCCUGcUGCc -3'
miRNA:   3'- -GGGG-----UCGG---UCC-GGGACG-----AGGAC-ACGu -5'
3612 3' -62.6 NC_001650.1 + 67124 0.66 0.630701
Target:  5'- gCCCCGGCCccaugcuccccGGCCCcaUGCUCCccgGCc -3'
miRNA:   3'- -GGGGUCGGu----------CCGGG--ACGAGGacaCGu -5'
3612 3' -62.6 NC_001650.1 + 135450 0.66 0.630701
Target:  5'- aCUgAGCUGGGCCCgggccuguacUGCUCCagGUGUc -3'
miRNA:   3'- gGGgUCGGUCCGGG----------ACGAGGa-CACGu -5'
3612 3' -62.6 NC_001650.1 + 59197 0.66 0.630701
Target:  5'- uCUCCAGCUccuGuCCCUGCUCCUcccgggcccGUGCc -3'
miRNA:   3'- -GGGGUCGGu--CcGGGACGAGGA---------CACGu -5'
3612 3' -62.6 NC_001650.1 + 26840 0.66 0.630701
Target:  5'- aCCgUGGCCGGGUCCaGCuUCUUGUGg- -3'
miRNA:   3'- -GGgGUCGGUCCGGGaCG-AGGACACgu -5'
3612 3' -62.6 NC_001650.1 + 72924 0.66 0.630701
Target:  5'- cCCaCCAGCUuGGCCCU-CUCgUGggugGCGa -3'
miRNA:   3'- -GG-GGUCGGuCCGGGAcGAGgACa---CGU- -5'
3612 3' -62.6 NC_001650.1 + 74950 0.66 0.627769
Target:  5'- gCCUGGUCuaugugcagcguguAGGCCCUGC-CCaugugGUGCAg -3'
miRNA:   3'- gGGGUCGG--------------UCCGGGACGaGGa----CACGU- -5'
3612 3' -62.6 NC_001650.1 + 156899 0.66 0.624836
Target:  5'- -aCCGGCCuuugagcuGGCCCaGCUCCagaucaccgccgcgGUGCAc -3'
miRNA:   3'- ggGGUCGGu-------CCGGGaCGAGGa-------------CACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.