miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3622 3' -51.8 NC_001650.1 + 59719 0.66 0.99221
Target:  5'- -gGACaugaGGGGCUacaggGGCGUCGaGGGGCc -3'
miRNA:   3'- uaCUGgaa-UUUUGA-----CCGUAGC-CCCCG- -5'
3622 3' -51.8 NC_001650.1 + 174328 0.66 0.992101
Target:  5'- -gGGCCUugggcaaUAAAGCccgUGGCccaaUGGGGGCu -3'
miRNA:   3'- uaCUGGA-------AUUUUG---ACCGua--GCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 7733 0.66 0.992101
Target:  5'- -gGGCCUugggcaaUAAAGCccgUGGCccaaUGGGGGCu -3'
miRNA:   3'- uaCUGGA-------AUUUUG---ACCGua--GCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 7621 0.66 0.992101
Target:  5'- -gGGCCUugggcaaUAAAGCccgUGGCccaaUGGGGGCu -3'
miRNA:   3'- uaCUGGA-------AUUUUG---ACCGua--GCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 174440 0.66 0.992101
Target:  5'- -gGGCCUugggcaaUAAAGCccgUGGCccaaUGGGGGCu -3'
miRNA:   3'- uaCUGGA-------AUUUUG---ACCGua--GCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 156769 0.66 0.99188
Target:  5'- cUGGCCUUcagcuCUGGCugcuccucugccaaGUaCGGGGGUc -3'
miRNA:   3'- uACUGGAAuuuu-GACCG--------------UA-GCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 98340 0.66 0.991068
Target:  5'- -gGAUgaUGAGGCggggGGCGaCGGGGGg -3'
miRNA:   3'- uaCUGgaAUUUUGa---CCGUaGCCCCCg -5'
3622 3' -51.8 NC_001650.1 + 77036 0.66 0.991068
Target:  5'- -aGGCCgc---GCUgGGCcUCGGGGGa -3'
miRNA:   3'- uaCUGGaauuuUGA-CCGuAGCCCCCg -5'
3622 3' -51.8 NC_001650.1 + 31237 0.66 0.991068
Target:  5'- -gGGCCg--GGACgaggguggGGCGaaGGGGGCg -3'
miRNA:   3'- uaCUGGaauUUUGa-------CCGUagCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 23429 0.66 0.991068
Target:  5'- -gGACCUcccg---GGCGUCcgagGGGGGCc -3'
miRNA:   3'- uaCUGGAauuuugaCCGUAG----CCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 51965 0.66 0.990947
Target:  5'- --aAUCUUcAGAACUaagcggcgguaaaGGCGUUGGGGGUa -3'
miRNA:   3'- uacUGGAA-UUUUGA-------------CCGUAGCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 159590 0.66 0.990575
Target:  5'- -aGACagcaccaucAACaUGGCggCGGGGGCg -3'
miRNA:   3'- uaCUGgaauu----UUG-ACCGuaGCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 50273 0.66 0.989797
Target:  5'- cUGcGCCcgGGAGCgGGCGgcggCGGGGGa -3'
miRNA:   3'- uAC-UGGaaUUUUGaCCGUa---GCCCCCg -5'
3622 3' -51.8 NC_001650.1 + 69772 0.66 0.989797
Target:  5'- -gGGCCUcAGGGC-GGCGUCcaGGGCg -3'
miRNA:   3'- uaCUGGAaUUUUGaCCGUAGccCCCG- -5'
3622 3' -51.8 NC_001650.1 + 23086 0.66 0.989797
Target:  5'- aAUGcuCCUguucauGCUGGCGUuccCGGGGGa -3'
miRNA:   3'- -UACu-GGAauuu--UGACCGUA---GCCCCCg -5'
3622 3' -51.8 NC_001650.1 + 134981 0.66 0.98897
Target:  5'- cGUGAggUCUgccucuggGGCAUCaGGGGGCg -3'
miRNA:   3'- -UACU--GGAauuuuga-CCGUAG-CCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 44949 0.66 0.988389
Target:  5'- cAUGACaa-AGGugUGGCAUCacaccaGGGGGa -3'
miRNA:   3'- -UACUGgaaUUUugACCGUAG------CCCCCg -5'
3622 3' -51.8 NC_001650.1 + 49391 0.66 0.988389
Target:  5'- uAUGGCCUUu-AAgUGGga--GGGGGCg -3'
miRNA:   3'- -UACUGGAAuuUUgACCguagCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 102807 0.66 0.988389
Target:  5'- gGUGAgCUguc-GCUGcuGCAUCuGGGGCg -3'
miRNA:   3'- -UACUgGAauuuUGAC--CGUAGcCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 70846 0.66 0.987475
Target:  5'- cUGGCCau---GCUGGCcagagcggcaacuccAUCGuGGGGCc -3'
miRNA:   3'- uACUGGaauuuUGACCG---------------UAGC-CCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.