miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3657 5' -62.8 NC_001650.1 + 140445 0.66 0.697094
Target:  5'- aGCCCaGGGuuacauGCUC--CCGGCGGCUuuaGGGg -3'
miRNA:   3'- -CGGG-CCCu-----CGAGguGGCCGCUGA---CCU- -5'
3657 5' -62.8 NC_001650.1 + 88023 0.66 0.697094
Target:  5'- uGCCCGGauGGCUCUcucGCCGGUcaggguGACUGaGGg -3'
miRNA:   3'- -CGGGCCc-UCGAGG---UGGCCG------CUGAC-CU- -5'
3657 5' -62.8 NC_001650.1 + 25324 0.66 0.687626
Target:  5'- uCCCGGGAGCagaUC-CCGGCcACggGGAg -3'
miRNA:   3'- cGGGCCCUCGa--GGuGGCCGcUGa-CCU- -5'
3657 5' -62.8 NC_001650.1 + 165742 0.66 0.687626
Target:  5'- gGCCCGGGgcGGCUCUuagGCCuagGGgGGCcugUGGGa -3'
miRNA:   3'- -CGGGCCC--UCGAGG---UGG---CCgCUG---ACCU- -5'
3657 5' -62.8 NC_001650.1 + 175837 0.66 0.678118
Target:  5'- gGCCCcauGGGA-CUCC-CCcGUGGCUGGGc -3'
miRNA:   3'- -CGGG---CCCUcGAGGuGGcCGCUGACCU- -5'
3657 5' -62.8 NC_001650.1 + 9130 0.66 0.678118
Target:  5'- gGCCCcauGGGA-CUCC-CCcGUGGCUGGGc -3'
miRNA:   3'- -CGGG---CCCUcGAGGuGGcCGCUGACCU- -5'
3657 5' -62.8 NC_001650.1 + 77047 0.66 0.678118
Target:  5'- gGCCUcggGGGAGCccgugUCCACgCGGCacaggucaaACUGGAc -3'
miRNA:   3'- -CGGG---CCCUCG-----AGGUG-GCCGc--------UGACCU- -5'
3657 5' -62.8 NC_001650.1 + 149136 0.66 0.668576
Target:  5'- uGCCCGGGAgacggGCUCCagugucaccccACCaaaGGgGAUUGGu -3'
miRNA:   3'- -CGGGCCCU-----CGAGG-----------UGG---CCgCUGACCu -5'
3657 5' -62.8 NC_001650.1 + 140472 0.66 0.659009
Target:  5'- cGCCgGuGGAGCUCC-CgGGCcgGGCUGa- -3'
miRNA:   3'- -CGGgC-CCUCGAGGuGgCCG--CUGACcu -5'
3657 5' -62.8 NC_001650.1 + 136504 0.66 0.659009
Target:  5'- gGUCgGGGGGCUgugaauUCACCGGgGGgaGGGu -3'
miRNA:   3'- -CGGgCCCUCGA------GGUGGCCgCUgaCCU- -5'
3657 5' -62.8 NC_001650.1 + 155435 0.66 0.659009
Target:  5'- aCCUGGGGGUcagguaCCGCgCGGacgGGCUGGAg -3'
miRNA:   3'- cGGGCCCUCGa-----GGUG-GCCg--CUGACCU- -5'
3657 5' -62.8 NC_001650.1 + 52304 0.66 0.659009
Target:  5'- aUuuGGGaAGaggCCACCGGCGgcccuguauACUGGAc -3'
miRNA:   3'- cGggCCC-UCga-GGUGGCCGC---------UGACCU- -5'
3657 5' -62.8 NC_001650.1 + 62874 0.66 0.659009
Target:  5'- aGCCaGGGGGCUCCGgagcacCCGGgGGCg--- -3'
miRNA:   3'- -CGGgCCCUCGAGGU------GGCCgCUGaccu -5'
3657 5' -62.8 NC_001650.1 + 125935 0.67 0.639823
Target:  5'- gGCCCGGuuuuucuGGCcgaggCGCCGGCGuCUGGGa -3'
miRNA:   3'- -CGGGCCc------UCGag---GUGGCCGCuGACCU- -5'
3657 5' -62.8 NC_001650.1 + 122137 0.67 0.639823
Target:  5'- gGCUCGGGGGCgggGgCGGCGGgaGGGg -3'
miRNA:   3'- -CGGGCCCUCGaggUgGCCGCUgaCCU- -5'
3657 5' -62.8 NC_001650.1 + 15136 0.67 0.636942
Target:  5'- cGCCCGGGGGCUCUG-CGGUuACaucagcacccccguUGGGc -3'
miRNA:   3'- -CGGGCCCUCGAGGUgGCCGcUG--------------ACCU- -5'
3657 5' -62.8 NC_001650.1 + 181843 0.67 0.636942
Target:  5'- cGCCCGGGGGCUCUG-CGGUuACaucagcacccccguUGGGc -3'
miRNA:   3'- -CGGGCCCUCGAGGUgGCCGcUG--------------ACCU- -5'
3657 5' -62.8 NC_001650.1 + 142350 0.67 0.630219
Target:  5'- uCUCGGG-GCUCC-CCGGCuGGaaGGAg -3'
miRNA:   3'- cGGGCCCuCGAGGuGGCCG-CUgaCCU- -5'
3657 5' -62.8 NC_001650.1 + 133140 0.67 0.620616
Target:  5'- cGCCgCGGGGGgaCCcuCgGGCGGCUGu- -3'
miRNA:   3'- -CGG-GCCCUCgaGGu-GgCCGCUGACcu -5'
3657 5' -62.8 NC_001650.1 + 58951 0.67 0.614858
Target:  5'- gGCCCGGGAGg--CGgCGGCGGCUucuggcacgggcccgGGAg -3'
miRNA:   3'- -CGGGCCCUCgagGUgGCCGCUGA---------------CCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.