miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3660 5' -56.9 NC_001650.1 + 75669 0.66 0.892415
Target:  5'- -gGCAGCcguuccAGCGACAGCccccUCGCGGCGc -3'
miRNA:   3'- ggUGUCG------UCGUUGUCGuc--GGCGUCGU- -5'
3660 5' -56.9 NC_001650.1 + 68650 0.66 0.892415
Target:  5'- aCGCGGCGuGCGcCAGCGGCa-CGGCc -3'
miRNA:   3'- gGUGUCGU-CGUuGUCGUCGgcGUCGu -5'
3660 5' -56.9 NC_001650.1 + 100314 0.66 0.892415
Target:  5'- aUCGCGGCGGCGugcgaGGCcGuCCGCAGg- -3'
miRNA:   3'- -GGUGUCGUCGUug---UCGuC-GGCGUCgu -5'
3660 5' -56.9 NC_001650.1 + 87368 0.66 0.88564
Target:  5'- aCGCAGUGcuacaucucgcGCAACAGcCAGCUGUGGUc -3'
miRNA:   3'- gGUGUCGU-----------CGUUGUC-GUCGGCGUCGu -5'
3660 5' -56.9 NC_001650.1 + 21743 0.66 0.88564
Target:  5'- uCCACcGCAGCcGCGGCccucCCaGCAGUAg -3'
miRNA:   3'- -GGUGuCGUCGuUGUCGuc--GG-CGUCGU- -5'
3660 5' -56.9 NC_001650.1 + 62857 0.66 0.88564
Target:  5'- -aGCAuaAGCAGCAGCAGagccagggggcuCCGgAGCAc -3'
miRNA:   3'- ggUGUcgUCGUUGUCGUC------------GGCgUCGU- -5'
3660 5' -56.9 NC_001650.1 + 89214 0.66 0.88564
Target:  5'- gCCAgGGCgGGCGGCGGCAaCUGCuGGCc -3'
miRNA:   3'- -GGUgUCG-UCGUUGUCGUcGGCG-UCGu -5'
3660 5' -56.9 NC_001650.1 + 158335 0.66 0.88495
Target:  5'- gCACAGCgaAGCAACcuccaugGGcCAGCCcCAGCu -3'
miRNA:   3'- gGUGUCG--UCGUUG-------UC-GUCGGcGUCGu -5'
3660 5' -56.9 NC_001650.1 + 20207 0.66 0.871424
Target:  5'- gCCAC-GCGGUGGCGGUAGUgUGCGGUu -3'
miRNA:   3'- -GGUGuCGUCGUUGUCGUCG-GCGUCGu -5'
3660 5' -56.9 NC_001650.1 + 165538 0.66 0.871424
Target:  5'- -gAgGGCuGUugAGCgGGCAGCUGCAGCAc -3'
miRNA:   3'- ggUgUCGuCG--UUG-UCGUCGGCGUCGU- -5'
3660 5' -56.9 NC_001650.1 + 175699 0.66 0.871424
Target:  5'- gUAguGCAGCAucggGCAGCAGCgGgCAcuGCAc -3'
miRNA:   3'- gGUguCGUCGU----UGUCGUCGgC-GU--CGU- -5'
3660 5' -56.9 NC_001650.1 + 107415 0.66 0.871424
Target:  5'- gUACuGGCGGCuggacuuuccaAAUGGCcacaGGCCGCAGCAc -3'
miRNA:   3'- gGUG-UCGUCG-----------UUGUCG----UCGGCGUCGU- -5'
3660 5' -56.9 NC_001650.1 + 51185 0.66 0.871424
Target:  5'- cCCGCAGCucGCAcACgGGCAGgCGCAcGUAg -3'
miRNA:   3'- -GGUGUCGu-CGU-UG-UCGUCgGCGU-CGU- -5'
3660 5' -56.9 NC_001650.1 + 50828 0.66 0.87069
Target:  5'- aCCGCGGCcccggcgcgcgagGGCGGCgAGCuGCCcuuucugcuggcGCAGCGc -3'
miRNA:   3'- -GGUGUCG-------------UCGUUG-UCGuCGG------------CGUCGU- -5'
3660 5' -56.9 NC_001650.1 + 78005 0.66 0.863993
Target:  5'- gCCGucCAGCAGCucCGGCAGCgGCcuCGa -3'
miRNA:   3'- -GGU--GUCGUCGuuGUCGUCGgCGucGU- -5'
3660 5' -56.9 NC_001650.1 + 102590 0.66 0.863993
Target:  5'- cCUGCuGCuGCAGCA-CGGaCUGCAGCAu -3'
miRNA:   3'- -GGUGuCGuCGUUGUcGUC-GGCGUCGU- -5'
3660 5' -56.9 NC_001650.1 + 80466 0.66 0.861723
Target:  5'- aCGCAcGCcucCAGCAGCAGCCcguucacguagaagGCGGCGc -3'
miRNA:   3'- gGUGU-CGuc-GUUGUCGUCGG--------------CGUCGU- -5'
3660 5' -56.9 NC_001650.1 + 57958 0.66 0.856354
Target:  5'- gCugGGCGGgaGGC-GCGGCCGgGGCGu -3'
miRNA:   3'- gGugUCGUCg-UUGuCGUCGGCgUCGU- -5'
3660 5' -56.9 NC_001650.1 + 109665 0.66 0.856354
Target:  5'- gCCugAGCAGCcuCuccaGGCCGCAGg- -3'
miRNA:   3'- -GGugUCGUCGuuGucg-UCGGCGUCgu -5'
3660 5' -56.9 NC_001650.1 + 77353 0.66 0.856354
Target:  5'- aCCACcgAGCucaugGGCGACGG-GGCCGCcGCGa -3'
miRNA:   3'- -GGUG--UCG-----UCGUUGUCgUCGGCGuCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.