miRNA display CGI


Results 1 - 20 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3663 3' -66.1 NC_001650.1 + 58165 0.66 0.516592
Target:  5'- cCCCGGccgcGCCUCCCGCccagcugagggugccGCcCCCGGcCg- -3'
miRNA:   3'- aGGGCC----CGGAGGGCG---------------CG-GGGUCaGau -5'
3663 3' -66.1 NC_001650.1 + 154852 0.66 0.512959
Target:  5'- gCCCacaGGCCuUCCUGCGaaaCCCCAGUUc- -3'
miRNA:   3'- aGGGc--CCGG-AGGGCGC---GGGGUCAGau -5'
3663 3' -66.1 NC_001650.1 + 122426 0.66 0.512959
Target:  5'- cCUCGGGCaccagCUCCCuCGCCgCGGUCc- -3'
miRNA:   3'- aGGGCCCG-----GAGGGcGCGGgGUCAGau -5'
3663 3' -66.1 NC_001650.1 + 178450 0.66 0.512959
Target:  5'- cUCCCGuGGaCCUCaCCGCGaCCaCCGGg--- -3'
miRNA:   3'- -AGGGC-CC-GGAG-GGCGC-GG-GGUCagau -5'
3663 3' -66.1 NC_001650.1 + 146483 0.66 0.512959
Target:  5'- gCCCGGGCg--CCGCGagcccagaaaCCCAGUCa- -3'
miRNA:   3'- aGGGCCCGgagGGCGCg---------GGGUCAGau -5'
3663 3' -66.1 NC_001650.1 + 11743 0.66 0.512959
Target:  5'- cUCCCGuGGaCCUCaCCGCGaCCaCCGGg--- -3'
miRNA:   3'- -AGGGC-CC-GGAG-GGCGC-GG-GGUCagau -5'
3663 3' -66.1 NC_001650.1 + 121298 0.66 0.50753
Target:  5'- gUCCCGGaaccccaggacgggcGCCcCCCGCGCCgCGG-Cg- -3'
miRNA:   3'- -AGGGCC---------------CGGaGGGCGCGGgGUCaGau -5'
3663 3' -66.1 NC_001650.1 + 167316 0.66 0.503925
Target:  5'- -gCCGGGCUgccgcccuccCCCGgGCCCCcauuGGUCg- -3'
miRNA:   3'- agGGCCCGGa---------GGGCgCGGGG----UCAGau -5'
3663 3' -66.1 NC_001650.1 + 157290 0.66 0.503925
Target:  5'- gCCUGGGgggcaCCUCCC-CGCCCCcgcccucgcccaGGUCg- -3'
miRNA:   3'- aGGGCCC-----GGAGGGcGCGGGG------------UCAGau -5'
3663 3' -66.1 NC_001650.1 + 609 0.66 0.503925
Target:  5'- -gCCGGGCUgccgcccuccCCCGgGCCCCcauuGGUCg- -3'
miRNA:   3'- agGGCCCGGa---------GGGCgCGGGG----UCAGau -5'
3663 3' -66.1 NC_001650.1 + 111118 0.66 0.503925
Target:  5'- gCCgGGGCCUgCUCGCcCCCCcauccAGUCg- -3'
miRNA:   3'- aGGgCCCGGA-GGGCGcGGGG-----UCAGau -5'
3663 3' -66.1 NC_001650.1 + 109107 0.66 0.503025
Target:  5'- gUCCUGGGCgUCCugggggagguggaCgaggcgGCGCaCCCGGUCUAc -3'
miRNA:   3'- -AGGGCCCGgAGG-------------G------CGCG-GGGUCAGAU- -5'
3663 3' -66.1 NC_001650.1 + 171650 0.66 0.498537
Target:  5'- uUCCCcgagccgggcacggaGGGCCUCCgGaGCCCCAuggCUGg -3'
miRNA:   3'- -AGGG---------------CCCGGAGGgCgCGGGGUca-GAU- -5'
3663 3' -66.1 NC_001650.1 + 4943 0.66 0.498537
Target:  5'- uUCCCcgagccgggcacggaGGGCCUCCgGaGCCCCAuggCUGg -3'
miRNA:   3'- -AGGG---------------CCCGGAGGgCgCGGGGUca-GAU- -5'
3663 3' -66.1 NC_001650.1 + 89340 0.66 0.494959
Target:  5'- gCCCGGGCCg--CGUGCUCCAuGUUg- -3'
miRNA:   3'- aGGGCCCGGaggGCGCGGGGU-CAGau -5'
3663 3' -66.1 NC_001650.1 + 146166 0.66 0.494959
Target:  5'- gUCCCGGGaCUUCCuCGCCCgGGcCg- -3'
miRNA:   3'- -AGGGCCCgGAGGGcGCGGGgUCaGau -5'
3663 3' -66.1 NC_001650.1 + 41620 0.66 0.486067
Target:  5'- cCCCGGGUUUcaggggggCCCGCgugGCUCCAGUUUu -3'
miRNA:   3'- aGGGCCCGGA--------GGGCG---CGGGGUCAGAu -5'
3663 3' -66.1 NC_001650.1 + 134329 0.66 0.477252
Target:  5'- cCCCGGcGCCcCCCGCggGCCCUccguGUCc- -3'
miRNA:   3'- aGGGCC-CGGaGGGCG--CGGGGu---CAGau -5'
3663 3' -66.1 NC_001650.1 + 50469 0.66 0.468516
Target:  5'- cUCCCGGGCg-CagagagGCGCCCCuGUCg- -3'
miRNA:   3'- -AGGGCCCGgaGgg----CGCGGGGuCAGau -5'
3663 3' -66.1 NC_001650.1 + 27594 0.66 0.468516
Target:  5'- uUCCCGGGCgUgCC-CGCCUCGGcccUCUc -3'
miRNA:   3'- -AGGGCCCGgAgGGcGCGGGGUC---AGAu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.