miRNA display CGI


Results 1 - 20 of 125 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3684 3' -55.8 NC_001650.1 + 177406 0.66 0.928466
Target:  5'- --uGGGUGGCAGGGGCCuuGGguaacuaucccagugGCCCa -3'
miRNA:   3'- gucUCUACCGUUUCCGGcgCU---------------UGGGc -5'
3684 3' -55.8 NC_001650.1 + 177057 0.68 0.876586
Target:  5'- uGGuGAUGGUGAAGGCaaaGagGGGCCCa -3'
miRNA:   3'- gUCuCUACCGUUUCCGg--Cg-CUUGGGc -5'
3684 3' -55.8 NC_001650.1 + 175995 0.67 0.90942
Target:  5'- gGGGGA-GGCAuuGGCCGguggaGGGCCUa -3'
miRNA:   3'- gUCUCUaCCGUuuCCGGCg----CUUGGGc -5'
3684 3' -55.8 NC_001650.1 + 172847 0.67 0.890392
Target:  5'- aGGAGAUGGUgggaugggagGGAGGCUGU--GCCUGu -3'
miRNA:   3'- gUCUCUACCG----------UUUCCGGCGcuUGGGC- -5'
3684 3' -55.8 NC_001650.1 + 170685 0.68 0.846446
Target:  5'- cUAGGGGUGGCGcccGGGGCggaGCucGCCCa -3'
miRNA:   3'- -GUCUCUACCGU---UUCCGg--CGcuUGGGc -5'
3684 3' -55.8 NC_001650.1 + 169559 0.66 0.941202
Target:  5'- gAGGGggGGagAGAGGCCGgccGCCCGg -3'
miRNA:   3'- gUCUCuaCCg-UUUCCGGCgcuUGGGC- -5'
3684 3' -55.8 NC_001650.1 + 165460 0.67 0.90942
Target:  5'- aGGGGAggaaGGCGAGcGGCC-CGAggaagcACCCGg -3'
miRNA:   3'- gUCUCUa---CCGUUU-CCGGcGCU------UGGGC- -5'
3684 3' -55.8 NC_001650.1 + 165347 0.66 0.941202
Target:  5'- ---cGcgGGUugaaaGAAGGCgGCGAGCCCc -3'
miRNA:   3'- gucuCuaCCG-----UUUCCGgCGCUUGGGc -5'
3684 3' -55.8 NC_001650.1 + 164740 0.66 0.931546
Target:  5'- -cGAGGaGGgGGAGGUCGCGcGCUCa -3'
miRNA:   3'- guCUCUaCCgUUUCCGGCGCuUGGGc -5'
3684 3' -55.8 NC_001650.1 + 163031 0.68 0.846446
Target:  5'- gGGAGAgugGcGCAGAcGGUCGC-AACCCGc -3'
miRNA:   3'- gUCUCUa--C-CGUUU-CCGGCGcUUGGGC- -5'
3684 3' -55.8 NC_001650.1 + 160410 0.69 0.830205
Target:  5'- gCAGGGGguguaGGCGAAGGCCGaggccacaaaGGACuuGa -3'
miRNA:   3'- -GUCUCUa----CCGUUUCCGGCg---------CUUGggC- -5'
3684 3' -55.8 NC_001650.1 + 159125 0.73 0.623703
Target:  5'- aCGGGGAgggucucugugggauUGGCGGgguAGGCCaugGCGGGCCCGc -3'
miRNA:   3'- -GUCUCU---------------ACCGUU---UCCGG---CGCUUGGGC- -5'
3684 3' -55.8 NC_001650.1 + 158814 0.67 0.915303
Target:  5'- -------cGCAAccGCCGCGAGCCCGa -3'
miRNA:   3'- gucucuacCGUUucCGGCGCUUGGGC- -5'
3684 3' -55.8 NC_001650.1 + 158726 0.7 0.786642
Target:  5'- aCGGAGAgaGCGAGGGCaagGUGAaACCCGg -3'
miRNA:   3'- -GUCUCUacCGUUUCCGg--CGCU-UGGGC- -5'
3684 3' -55.8 NC_001650.1 + 158724 0.67 0.901427
Target:  5'- uCGGGGgcGuGCAGGGGUCGCagguccucauccccGGACCCa -3'
miRNA:   3'- -GUCUCuaC-CGUUUCCGGCG--------------CUUGGGc -5'
3684 3' -55.8 NC_001650.1 + 158252 0.68 0.876586
Target:  5'- cCAGGGGgcUGGC---GGCCGUGGagGCCUGg -3'
miRNA:   3'- -GUCUCU--ACCGuuuCCGGCGCU--UGGGC- -5'
3684 3' -55.8 NC_001650.1 + 155254 0.67 0.91759
Target:  5'- uGGuGGUGGCGuaaaacugggucuGGCCGCaGGCCCu -3'
miRNA:   3'- gUCuCUACCGUuu-----------CCGGCGcUUGGGc -5'
3684 3' -55.8 NC_001650.1 + 155034 0.7 0.7588
Target:  5'- cCAGGGGUGGUAGgcggccgagGGGUCGCaGAgcagGCCCa -3'
miRNA:   3'- -GUCUCUACCGUU---------UCCGGCG-CU----UGGGc -5'
3684 3' -55.8 NC_001650.1 + 147395 0.71 0.710315
Target:  5'- uGGAGua-GCAGAGGuuGUGGGCCUGg -3'
miRNA:   3'- gUCUCuacCGUUUCCggCGCUUGGGC- -5'
3684 3' -55.8 NC_001650.1 + 147098 0.68 0.854284
Target:  5'- -uGAGAcagGGCAggaugcccGAGGCCacgcccGUGAACCCGu -3'
miRNA:   3'- guCUCUa--CCGU--------UUCCGG------CGCUUGGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.