miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
369 3' -53 AC_000011.1 + 16774 0.66 0.749256
Target:  5'- aCGCCCAGGcccGggGCCaCCuGCuugauGGGCc -3'
miRNA:   3'- gGCGGGUUCuu-CuuUGG-GG-CGu----UCUG- -5'
369 3' -53 AC_000011.1 + 14678 0.66 0.738341
Target:  5'- gCgGCUCucgguGAAGuccACCCCGCAgccGGGCa -3'
miRNA:   3'- -GgCGGGuu---CUUCuu-UGGGGCGU---UCUG- -5'
369 3' -53 AC_000011.1 + 1723 0.66 0.727308
Target:  5'- aUCuCCaCAGGuAAGAGACUCCGUucGAGGCg -3'
miRNA:   3'- -GGcGG-GUUC-UUCUUUGGGGCG--UUCUG- -5'
369 3' -53 AC_000011.1 + 22630 0.66 0.727308
Target:  5'- gCGaUCUggGAAugcgcgugcacGAAGCCCUGCAGGAa -3'
miRNA:   3'- gGC-GGGuuCUU-----------CUUUGGGGCGUUCUg -5'
369 3' -53 AC_000011.1 + 24452 0.66 0.727308
Target:  5'- uUCGCCgAcGcGGAGACCCugCGCAAGGu -3'
miRNA:   3'- -GGCGGgUuCuUCUUUGGG--GCGUUCUg -5'
369 3' -53 AC_000011.1 + 23048 0.66 0.716171
Target:  5'- gCUGUCCuGGcuGAcgUCCUGCAGGACc -3'
miRNA:   3'- -GGCGGGuUCuuCUuuGGGGCGUUCUG- -5'
369 3' -53 AC_000011.1 + 11027 0.67 0.682268
Target:  5'- cCCGCgCGugcAGAugaaaAGGGACgCUCGCGAGGCc -3'
miRNA:   3'- -GGCGgGU---UCU-----UCUUUG-GGGCGUUCUG- -5'
369 3' -53 AC_000011.1 + 11626 0.67 0.669701
Target:  5'- aCG-CUAGGAAGAucuacaaGACCCCGUAcgugcccauAGACa -3'
miRNA:   3'- gGCgGGUUCUUCU-------UUGGGGCGU---------UCUG- -5'
369 3' -53 AC_000011.1 + 7176 0.67 0.649044
Target:  5'- gCCGCCCAGGccuacgcccuCCCCGUggagaAGGGCu -3'
miRNA:   3'- -GGCGGGUUCuucuuu----GGGGCG-----UUCUG- -5'
369 3' -53 AC_000011.1 + 6025 0.67 0.647894
Target:  5'- cCCGCCUucGAGAGGGAauaccuACCCCaacagcuggcGCuccuGGACa -3'
miRNA:   3'- -GGCGGG--UUCUUCUU------UGGGG----------CGu---UCUG- -5'
369 3' -53 AC_000011.1 + 25621 0.67 0.647893
Target:  5'- -gGCagAGGAGGAcAgCCUGCAAGACa -3'
miRNA:   3'- ggCGggUUCUUCUuUgGGGCGUUCUG- -5'
369 3' -53 AC_000011.1 + 9496 0.67 0.647893
Target:  5'- uUGCCCcgu-AGGGACUCCGCGcaaGGACc -3'
miRNA:   3'- gGCGGGuucuUCUUUGGGGCGU---UCUG- -5'
369 3' -53 AC_000011.1 + 4091 0.67 0.636388
Target:  5'- cCCGuCCCGGGGguGGAgguAGCUCCauuGCAGGGCc -3'
miRNA:   3'- -GGC-GGGUUCU--UCU---UUGGGG---CGUUCUG- -5'
369 3' -53 AC_000011.1 + 21595 0.68 0.624878
Target:  5'- gUCGcCCCAGGuGGAAcccACCCUGCGccgcaaccaggAGGCg -3'
miRNA:   3'- -GGC-GGGUUCuUCUU---UGGGGCGU-----------UCUG- -5'
369 3' -53 AC_000011.1 + 8338 0.68 0.624878
Target:  5'- gCGCCCuGGAA-AAACuCCUGCAAGuCa -3'
miRNA:   3'- gGCGGGuUCUUcUUUG-GGGCGUUCuG- -5'
369 3' -53 AC_000011.1 + 17792 0.68 0.60189
Target:  5'- gCCGCCCGccGGcuccguGGAGAUgCCGCAGGu- -3'
miRNA:   3'- -GGCGGGU--UCu-----UCUUUGgGGCGUUCug -5'
369 3' -53 AC_000011.1 + 25968 0.68 0.600743
Target:  5'- gCGCCgGGuGAAGGAGauguugcCCCCGCAGGcCu -3'
miRNA:   3'- gGCGGgUU-CUUCUUU-------GGGGCGUUCuG- -5'
369 3' -53 AC_000011.1 + 16154 0.68 0.590433
Target:  5'- aCgGCCCugcgguggugaAGGAGGAAagaaaGCCCCGCAAa-- -3'
miRNA:   3'- -GgCGGG-----------UUCUUCUU-----UGGGGCGUUcug -5'
369 3' -53 AC_000011.1 + 5701 0.68 0.590433
Target:  5'- cCCGCCCAcuccgAGAcGAAAgCCCGgGuccAGGCc -3'
miRNA:   3'- -GGCGGGU-----UCUuCUUUgGGGCgU---UCUG- -5'
369 3' -53 AC_000011.1 + 34390 0.68 0.579015
Target:  5'- aCCauauCCCAGGGcacgGGGAACuCuuGCAGGACa -3'
miRNA:   3'- -GGc---GGGUUCU----UCUUUG-GggCGUUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.