miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3710 5' -54.9 NC_001650.1 + 120899 0.66 0.965973
Target:  5'- cCGuUCUUaagGGACAGGUAgggaaacaccaggguGGCCGaCAGGGg -3'
miRNA:   3'- cGC-AGAG---CCUGUCCAU---------------CCGGC-GUUUC- -5'
3710 5' -54.9 NC_001650.1 + 133032 0.66 0.964687
Target:  5'- -aGUCUCugaggGGAgAGGgcGGCC-CAGAGu -3'
miRNA:   3'- cgCAGAG-----CCUgUCCauCCGGcGUUUC- -5'
3710 5' -54.9 NC_001650.1 + 146688 0.66 0.961325
Target:  5'- cGCGgugacUUCGGcagcACGGGagAGGUCGCGGGGa -3'
miRNA:   3'- -CGCa----GAGCC----UGUCCa-UCCGGCGUUUC- -5'
3710 5' -54.9 NC_001650.1 + 27162 0.66 0.961325
Target:  5'- uUGUCaggagggUGGACAGGUucagcaacGGGCUGguGAGg -3'
miRNA:   3'- cGCAGa------GCCUGUCCA--------UCCGGCguUUC- -5'
3710 5' -54.9 NC_001650.1 + 55967 0.66 0.961325
Target:  5'- ---cCUCGGGCAcGGgcccgUAGGCgCGCAGGGc -3'
miRNA:   3'- cgcaGAGCCUGU-CC-----AUCCG-GCGUUUC- -5'
3710 5' -54.9 NC_001650.1 + 41007 0.66 0.961325
Target:  5'- gGUGUCUUGGACGgcGGUcGGUgCGCuGAGu -3'
miRNA:   3'- -CGCAGAGCCUGU--CCAuCCG-GCGuUUC- -5'
3710 5' -54.9 NC_001650.1 + 137913 0.66 0.961325
Target:  5'- cGCGaugacUUCGGccgcaACGGGggAGGUCGCGAGGa -3'
miRNA:   3'- -CGCa----GAGCC-----UGUCCa-UCCGGCGUUUC- -5'
3710 5' -54.9 NC_001650.1 + 66876 0.66 0.957748
Target:  5'- gGCGcCggGGGCGGGggcgagccggGGGCCGgGGAGc -3'
miRNA:   3'- -CGCaGagCCUGUCCa---------UCCGGCgUUUC- -5'
3710 5' -54.9 NC_001650.1 + 35272 0.66 0.957748
Target:  5'- cGCGgg-UGGGCGGGgcGGGCCGgGGAc -3'
miRNA:   3'- -CGCagaGCCUGUCCa-UCCGGCgUUUc -5'
3710 5' -54.9 NC_001650.1 + 153741 0.66 0.957748
Target:  5'- cGCGUCcgCGGGCGGGaUGGGCg------ -3'
miRNA:   3'- -CGCAGa-GCCUGUCC-AUCCGgcguuuc -5'
3710 5' -54.9 NC_001650.1 + 88585 0.66 0.955496
Target:  5'- uGCGUCUCGGACguggacauagugaucAGGacGGCCaGgGGGGu -3'
miRNA:   3'- -CGCAGAGCCUG---------------UCCauCCGG-CgUUUC- -5'
3710 5' -54.9 NC_001650.1 + 73465 0.66 0.95395
Target:  5'- uUGUCUCGGGggcuuCGGGggcGGCUGCuGGGg -3'
miRNA:   3'- cGCAGAGCCU-----GUCCau-CCGGCGuUUC- -5'
3710 5' -54.9 NC_001650.1 + 52587 0.66 0.95395
Target:  5'- gGCGgccgccagCUCGGGcCGGGU-GGCCaGCAGc- -3'
miRNA:   3'- -CGCa-------GAGCCU-GUCCAuCCGG-CGUUuc -5'
3710 5' -54.9 NC_001650.1 + 156563 0.66 0.949929
Target:  5'- aGCaUCUgGGGCgagaAGG-AGGCCGCGuAGg -3'
miRNA:   3'- -CGcAGAgCCUG----UCCaUCCGGCGUuUC- -5'
3710 5' -54.9 NC_001650.1 + 23311 0.66 0.949929
Target:  5'- uGCGcCUCGGGCA---GGGUCGCGcAGc -3'
miRNA:   3'- -CGCaGAGCCUGUccaUCCGGCGUuUC- -5'
3710 5' -54.9 NC_001650.1 + 30698 0.67 0.934541
Target:  5'- aGCGggagggGGGCGGGagagcgagaggcgGGGCCGCGAGGa -3'
miRNA:   3'- -CGCagag--CCUGUCCa------------UCCGGCGUUUC- -5'
3710 5' -54.9 NC_001650.1 + 161396 0.67 0.926366
Target:  5'- cGCcucCUCGGGCAGG-AGGCUGguGuAGg -3'
miRNA:   3'- -CGca-GAGCCUGUCCaUCCGGCguU-UC- -5'
3710 5' -54.9 NC_001650.1 + 49878 0.68 0.915302
Target:  5'- gGCGUgUgGGACAcGGaGGGCCcCGGGGg -3'
miRNA:   3'- -CGCAgAgCCUGU-CCaUCCGGcGUUUC- -5'
3710 5' -54.9 NC_001650.1 + 99523 0.68 0.915302
Target:  5'- uUGUCUCGGGCuGagacAGGCCGCucAGc -3'
miRNA:   3'- cGCAGAGCCUGuCca--UCCGGCGuuUC- -5'
3710 5' -54.9 NC_001650.1 + 101655 0.68 0.90761
Target:  5'- cGCGUcCUCGG-CGGGccgguacauguaguUGGGCagcaGCAGGGg -3'
miRNA:   3'- -CGCA-GAGCCuGUCC--------------AUCCGg---CGUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.