miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3724 3' -54.8 NC_001650.1 + 89144 1.14 0.002648
Target:  5'- cCCUGGAGAUGGCCACGUACACGUGGCu -3'
miRNA:   3'- -GGACCUCUACCGGUGCAUGUGCACCG- -5'
3724 3' -54.8 NC_001650.1 + 146297 0.71 0.783122
Target:  5'- gCCggGGGGAUguugugcugGGCCGCGUAgGCGgGGUc -3'
miRNA:   3'- -GGa-CCUCUA---------CCGGUGCAUgUGCaCCG- -5'
3724 3' -54.8 NC_001650.1 + 112694 0.71 0.809742
Target:  5'- -aUGGAGGucuuccUGGCUAUGUGCgugACGUGGg -3'
miRNA:   3'- ggACCUCU------ACCGGUGCAUG---UGCACCg -5'
3724 3' -54.8 NC_001650.1 + 119700 0.66 0.971954
Target:  5'- cCCUGGuaguguaaaAGAcauugugGGUCGCGUGCugG-GGUc -3'
miRNA:   3'- -GGACC---------UCUa------CCGGUGCAUGugCaCCG- -5'
3724 3' -54.8 NC_001650.1 + 103019 0.75 0.596718
Target:  5'- uCCgUGGAGAacauccacgugGGCUACGUggcccaccagaaGCACGUGGCc -3'
miRNA:   3'- -GG-ACCUCUa----------CCGGUGCA------------UGUGCACCG- -5'
3724 3' -54.8 NC_001650.1 + 7212 0.75 0.606765
Target:  5'- --aGGuAGAUGGCCACGUAgGUGUGGa -3'
miRNA:   3'- ggaCC-UCUACCGGUGCAUgUGCACCg -5'
3724 3' -54.8 NC_001650.1 + 173919 0.75 0.606765
Target:  5'- --aGGuAGAUGGCCACGUAgGUGUGGa -3'
miRNA:   3'- ggaCC-UCUACCGGUGCAUgUGCACCg -5'
3724 3' -54.8 NC_001650.1 + 28391 0.74 0.616829
Target:  5'- cCCUGGAGGa---CGCGUGCGCG-GGCg -3'
miRNA:   3'- -GGACCUCUaccgGUGCAUGUGCaCCG- -5'
3724 3' -54.8 NC_001650.1 + 72742 0.73 0.686175
Target:  5'- gCCcGGGGGUGGCCugGgguaucuUGCuaaaGUGGCa -3'
miRNA:   3'- -GGaCCUCUACCGGugC-------AUGug--CACCG- -5'
3724 3' -54.8 NC_001650.1 + 112448 0.71 0.783122
Target:  5'- aCCUcuauGGUGGCCGCGUccacCACGUGGg -3'
miRNA:   3'- -GGAccu-CUACCGGUGCAu---GUGCACCg -5'
3724 3' -54.8 NC_001650.1 + 180904 0.72 0.762837
Target:  5'- gCCUGuuuaAGAUGGCCGCcgcuccucacCACGUGGCc -3'
miRNA:   3'- -GGACc---UCUACCGGUGcau-------GUGCACCG- -5'
3724 3' -54.8 NC_001650.1 + 122967 0.74 0.657126
Target:  5'- gCUGGAGcaGGCCACcgcccucCACGUGGCc -3'
miRNA:   3'- gGACCUCuaCCGGUGcau----GUGCACCG- -5'
3724 3' -54.8 NC_001650.1 + 110916 0.81 0.293937
Target:  5'- uCCgUGGuGAUggaGGCCACGUGCGCG-GGCa -3'
miRNA:   3'- -GG-ACCuCUA---CCGGUGCAUGUGCaCCG- -5'
3724 3' -54.8 NC_001650.1 + 14124 0.71 0.773975
Target:  5'- aCCgggGGuccuaAGAUGGCCGCcccgcccCACGUGGCc -3'
miRNA:   3'- -GGa--CC-----UCUACCGGUGcau----GUGCACCG- -5'
3724 3' -54.8 NC_001650.1 + 125601 0.79 0.391638
Target:  5'- cCCUGGAGAU-GCUGC--ACACGUGGCu -3'
miRNA:   3'- -GGACCUCUAcCGGUGcaUGUGCACCG- -5'
3724 3' -54.8 NC_001650.1 + 102274 0.74 0.636985
Target:  5'- cCCcGGAGGUGGUCAUagACGCGagGGCg -3'
miRNA:   3'- -GGaCCUCUACCGGUGcaUGUGCa-CCG- -5'
3724 3' -54.8 NC_001650.1 + 180831 0.71 0.773975
Target:  5'- aCCgggGGuccuaAGAUGGCCGCcccgcccCACGUGGCc -3'
miRNA:   3'- -GGa--CC-----UCUACCGGUGcau----GUGCACCG- -5'
3724 3' -54.8 NC_001650.1 + 109513 0.71 0.792138
Target:  5'- -gUGGugcaGGGUGGUCGCGUGgaaccuCACGUGGUc -3'
miRNA:   3'- ggACC----UCUACCGGUGCAU------GUGCACCG- -5'
3724 3' -54.8 NC_001650.1 + 147415 0.77 0.498658
Target:  5'- gCCUGGAuGAUGGUgGgGUACAgGcUGGCa -3'
miRNA:   3'- -GGACCU-CUACCGgUgCAUGUgC-ACCG- -5'
3724 3' -54.8 NC_001650.1 + 111601 0.75 0.606765
Target:  5'- --aGGAGGUGGCCAgCGUGCGgaucauguccacCGUGGg -3'
miRNA:   3'- ggaCCUCUACCGGU-GCAUGU------------GCACCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.