miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3724 5' -59.8 NC_001650.1 + 172040 0.66 0.768065
Target:  5'- -gGCCAcgugguGGGgAGGCGGCCaucuugucuguGCCgCGGCg -3'
miRNA:   3'- aaCGGU------UUCgUCUGCCGG-----------UGG-GCCGa -5'
3724 5' -59.8 NC_001650.1 + 124385 0.66 0.768065
Target:  5'- -cGCCcauGAGCGa--GGaCCGCCCGGCc -3'
miRNA:   3'- aaCGGu--UUCGUcugCC-GGUGGGCCGa -5'
3724 5' -59.8 NC_001650.1 + 158952 0.66 0.768065
Target:  5'- -aGUgGGAGUgcGCGGUCACCCaGGCa -3'
miRNA:   3'- aaCGgUUUCGucUGCCGGUGGG-CCGa -5'
3724 5' -59.8 NC_001650.1 + 26056 0.66 0.768065
Target:  5'- -gGCCuacAGCGG-CGGCCugaGCgCCGGCc -3'
miRNA:   3'- aaCGGuu-UCGUCuGCCGG---UG-GGCCGa -5'
3724 5' -59.8 NC_001650.1 + 161781 0.66 0.768065
Target:  5'- -aGCCcAGGagGGugGGCgCGCCCGaGCa -3'
miRNA:   3'- aaCGGuUUCg-UCugCCG-GUGGGC-CGa -5'
3724 5' -59.8 NC_001650.1 + 4719 0.66 0.768065
Target:  5'- -aGCCAugGGGCuccGGA-GGCCcuccguGCCCGGCUc -3'
miRNA:   3'- aaCGGU--UUCG---UCUgCCGG------UGGGCCGA- -5'
3724 5' -59.8 NC_001650.1 + 5333 0.66 0.768065
Target:  5'- -gGCCAcgugguGGGgAGGCGGCCaucuugucuguGCCgCGGCg -3'
miRNA:   3'- aaCGGU------UUCgUCUGCCGG-----------UGG-GCCGa -5'
3724 5' -59.8 NC_001650.1 + 171426 0.66 0.768065
Target:  5'- -aGCCAugGGGCuccGGA-GGCCcuccguGCCCGGCUc -3'
miRNA:   3'- aaCGGU--UUCG---UCUgCCGG------UGGGCCGA- -5'
3724 5' -59.8 NC_001650.1 + 181791 0.66 0.758734
Target:  5'- gUG-UGAGGUAGGCGGUUGCCgGGCa -3'
miRNA:   3'- aACgGUUUCGUCUGCCGGUGGgCCGa -5'
3724 5' -59.8 NC_001650.1 + 180345 0.66 0.758734
Target:  5'- cUGCUGAGGgGGACGcuGCCAgacCCUGGCc -3'
miRNA:   3'- aACGGUUUCgUCUGC--CGGU---GGGCCGa -5'
3724 5' -59.8 NC_001650.1 + 124215 0.66 0.758734
Target:  5'- -cGCCAAAGaGGugGGCCAgaagCUGGUg -3'
miRNA:   3'- aaCGGUUUCgUCugCCGGUg---GGCCGa -5'
3724 5' -59.8 NC_001650.1 + 13638 0.66 0.758734
Target:  5'- cUGCUGAGGgGGACGcuGCCAgacCCUGGCc -3'
miRNA:   3'- aACGGUUUCgUCUGC--CGGU---GGGCCGa -5'
3724 5' -59.8 NC_001650.1 + 116077 0.66 0.758734
Target:  5'- gUGUUAAacAGCAGcGCGGCCGCCCucguguGCa -3'
miRNA:   3'- aACGGUU--UCGUC-UGCCGGUGGGc-----CGa -5'
3724 5' -59.8 NC_001650.1 + 15084 0.66 0.758734
Target:  5'- gUG-UGAGGUAGGCGGUUGCCgGGCa -3'
miRNA:   3'- aACgGUUUCGUCUGCCGGUGGgCCGa -5'
3724 5' -59.8 NC_001650.1 + 181760 0.66 0.755914
Target:  5'- aUGCCAGcgGGCcgcugggggggaagGGACGGCCccGCCC-GCUu -3'
miRNA:   3'- aACGGUU--UCG--------------UCUGCCGG--UGGGcCGA- -5'
3724 5' -59.8 NC_001650.1 + 15053 0.66 0.755914
Target:  5'- aUGCCAGcgGGCcgcugggggggaagGGACGGCCccGCCC-GCUu -3'
miRNA:   3'- aACGGUU--UCG--------------UCUGCCGG--UGGGcCGA- -5'
3724 5' -59.8 NC_001650.1 + 19289 0.66 0.749295
Target:  5'- -aGCCGGGGUgagagacuGGCGGCgGCCgCGGUg -3'
miRNA:   3'- aaCGGUUUCGu-------CUGCCGgUGG-GCCGa -5'
3724 5' -59.8 NC_001650.1 + 62816 0.66 0.749295
Target:  5'- gUGCuUGAGGCgcgAGGCGGCgCcCCCGGCc -3'
miRNA:   3'- aACG-GUUUCG---UCUGCCG-GuGGGCCGa -5'
3724 5' -59.8 NC_001650.1 + 54190 0.66 0.749295
Target:  5'- -cGCCGgugGAGCucccgGGCCGCCCaGGCUc -3'
miRNA:   3'- aaCGGU---UUCGucug-CCGGUGGG-CCGA- -5'
3724 5' -59.8 NC_001650.1 + 129291 0.66 0.749295
Target:  5'- cUGCCAAAaauccccCGGCCGCCCGaGCg -3'
miRNA:   3'- aACGGUUUcgucu--GCCGGUGGGC-CGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.