miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3726 5' -58.3 NC_001650.1 + 184194 0.66 0.829466
Target:  5'- gCCAcGCCCCCUCCauuuucucaGGCcCAaaugucgacgggcgcGAGGGG-- -3'
miRNA:   3'- -GGUuUGGGGGAGG---------CCG-GU---------------UUCCCCuu -5'
3726 5' -58.3 NC_001650.1 + 183655 0.69 0.687669
Target:  5'- aCCAauauggcuGACCCCCUCauGCgCAcAGGGGGc -3'
miRNA:   3'- -GGU--------UUGGGGGAGgcCG-GUuUCCCCUu -5'
3726 5' -58.3 NC_001650.1 + 183569 0.66 0.85019
Target:  5'- ---cACCCgUCUCCGGgCAGaccucGGGGGAGa -3'
miRNA:   3'- gguuUGGG-GGAGGCCgGUU-----UCCCCUU- -5'
3726 5' -58.3 NC_001650.1 + 182758 0.69 0.677767
Target:  5'- aCAAcAUCCCUcCCGGCCAAugggagccGGGGGGc -3'
miRNA:   3'- gGUU-UGGGGGaGGCCGGUU--------UCCCCUu -5'
3726 5' -58.3 NC_001650.1 + 182592 0.77 0.270601
Target:  5'- aCAAuAUCCCCUCuCGGCCAAuGGGGGu -3'
miRNA:   3'- gGUU-UGGGGGAG-GCCGGUUuCCCCUu -5'
3726 5' -58.3 NC_001650.1 + 182459 0.69 0.697528
Target:  5'- cCCAcagGGCCUCCa-UGGCCAAuGGGGAGa -3'
miRNA:   3'- -GGU---UUGGGGGagGCCGGUUuCCCCUU- -5'
3726 5' -58.3 NC_001650.1 + 182198 0.69 0.697528
Target:  5'- cCCuGGCCUCCa-UGGCCAAuGGGGAGa -3'
miRNA:   3'- -GGuUUGGGGGagGCCGGUUuCCCCUU- -5'
3726 5' -58.3 NC_001650.1 + 181886 0.66 0.834356
Target:  5'- gCGGguAUCCCCaUgUGGCCAAcGGGGAGu -3'
miRNA:   3'- gGUU--UGGGGG-AgGCCGGUUuCCCCUU- -5'
3726 5' -58.3 NC_001650.1 + 181468 0.75 0.377759
Target:  5'- cCCAugaCCCCUCUGGCCAauagaggccuaGAGGGGu- -3'
miRNA:   3'- -GGUuugGGGGAGGCCGGU-----------UUCCCCuu -5'
3726 5' -58.3 NC_001650.1 + 181303 0.67 0.809306
Target:  5'- uCCAuuaauggacAGCCCCCcUgGGCCAAuagggugggcuAGGGGGu -3'
miRNA:   3'- -GGU---------UUGGGGGaGgCCGGUU-----------UCCCCUu -5'
3726 5' -58.3 NC_001650.1 + 180931 0.73 0.454449
Target:  5'- aCCAcguGGCCCCUaCCGGCCAAu-GGGAGc -3'
miRNA:   3'- -GGU---UUGGGGGaGGCCGGUUucCCCUU- -5'
3726 5' -58.3 NC_001650.1 + 180196 0.73 0.454449
Target:  5'- gCCGAGuuCCCCauuUCUGGCCAAuGGGGAc -3'
miRNA:   3'- -GGUUU--GGGGg--AGGCCGGUUuCCCCUu -5'
3726 5' -58.3 NC_001650.1 + 179857 0.72 0.538815
Target:  5'- cCCAuGCCUggcacgucaUCUCUGGCCAAuGGGGAGc -3'
miRNA:   3'- -GGUuUGGG---------GGAGGCCGGUUuCCCCUU- -5'
3726 5' -58.3 NC_001650.1 + 179792 0.74 0.385842
Target:  5'- gCCcGGCCCUCUgcggucgaggCCGGCCAAuGGGGGAc -3'
miRNA:   3'- -GGuUUGGGGGA----------GGCCGGUUuCCCCUU- -5'
3726 5' -58.3 NC_001650.1 + 178168 0.66 0.857827
Target:  5'- cCCGGGCCCaaUggGGaCCGAGGGGGAc -3'
miRNA:   3'- -GGUUUGGGggAggCC-GGUUUCCCCUu -5'
3726 5' -58.3 NC_001650.1 + 177945 0.76 0.324434
Target:  5'- cCCAcuACCCCCUCUGcCCAAuGGGGAAu -3'
miRNA:   3'- -GGUu-UGGGGGAGGCcGGUUuCCCCUU- -5'
3726 5' -58.3 NC_001650.1 + 177782 0.75 0.36979
Target:  5'- cCCAuAUCCCCUCUGcCCAAuGGGGAAu -3'
miRNA:   3'- -GGUuUGGGGGAGGCcGGUUuCCCCUU- -5'
3726 5' -58.3 NC_001650.1 + 174414 0.7 0.647876
Target:  5'- cCCGAGCCCCCaUUgGGU---GGGGGAc -3'
miRNA:   3'- -GGUUUGGGGG-AGgCCGguuUCCCCUu -5'
3726 5' -58.3 NC_001650.1 + 173527 0.68 0.736355
Target:  5'- cCCAAGgCCCCUgCCacccauugGGCCAGGGGGc-- -3'
miRNA:   3'- -GGUUUgGGGGA-GG--------CCGGUUUCCCcuu -5'
3726 5' -58.3 NC_001650.1 + 173289 0.66 0.857827
Target:  5'- cCUAAGCCCCCaUUgGGCCAu-GGGc-- -3'
miRNA:   3'- -GGUUUGGGGG-AGgCCGGUuuCCCcuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.