miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3731 5' -51.1 NC_001650.1 + 61116 0.65 0.997367
Target:  5'- gUGAUGAggagcUCgCCUCCCCcgccgcccccGGGUCCc -3'
miRNA:   3'- -ACUACU-----AGgGGAGGGGcaau------UUCAGG- -5'
3731 5' -51.1 NC_001650.1 + 138816 0.66 0.996577
Target:  5'- --uUGGUcCCCCUCUCgGUUGcgcGGGUCa -3'
miRNA:   3'- acuACUA-GGGGAGGGgCAAU---UUCAGg -5'
3731 5' -51.1 NC_001650.1 + 145414 0.66 0.996577
Target:  5'- gGGUGGUagCCCUCCagCGc-AAAGUCCu -3'
miRNA:   3'- aCUACUAg-GGGAGGg-GCaaUUUCAGG- -5'
3731 5' -51.1 NC_001650.1 + 156028 0.66 0.996577
Target:  5'- gGAcuUGAUgCUCUCCCUGU---AGUUCa -3'
miRNA:   3'- aCU--ACUAgGGGAGGGGCAauuUCAGG- -5'
3731 5' -51.1 NC_001650.1 + 46286 0.66 0.995991
Target:  5'- aGGUGAaCUCCUcgcgaccucCCCCGUUgcggccGAAGUCa -3'
miRNA:   3'- aCUACUaGGGGA---------GGGGCAA------UUUCAGg -5'
3731 5' -51.1 NC_001650.1 + 159480 0.66 0.995991
Target:  5'- aGAaGGUgUCCUUCCUGgacagAAAGUCCc -3'
miRNA:   3'- aCUaCUAgGGGAGGGGCaa---UUUCAGG- -5'
3731 5' -51.1 NC_001650.1 + 84781 0.66 0.995991
Target:  5'- aGG-GGUCCCCUcgcaCCUCGgu--GGUCCc -3'
miRNA:   3'- aCUaCUAGGGGA----GGGGCaauuUCAGG- -5'
3731 5' -51.1 NC_001650.1 + 91353 0.66 0.995325
Target:  5'- gGAUGAaCCCCgcCCCCGgcucc-UCCa -3'
miRNA:   3'- aCUACUaGGGGa-GGGGCaauuucAGG- -5'
3731 5' -51.1 NC_001650.1 + 98579 0.66 0.994572
Target:  5'- aGA-GGUCCCagUCCCUGUcaGAGGUCa -3'
miRNA:   3'- aCUaCUAGGGg-AGGGGCAa-UUUCAGg -5'
3731 5' -51.1 NC_001650.1 + 27876 0.67 0.994075
Target:  5'- aGAUGAcugggcugaggcacCCCCUgccCCCCGUcGAGGcCCa -3'
miRNA:   3'- aCUACUa-------------GGGGA---GGGGCAaUUUCaGG- -5'
3731 5' -51.1 NC_001650.1 + 164649 0.67 0.993723
Target:  5'- -----cUUCCCUCCUCGcccucggGAAGUCCa -3'
miRNA:   3'- acuacuAGGGGAGGGGCaa-----UUUCAGG- -5'
3731 5' -51.1 NC_001650.1 + 145836 0.67 0.993723
Target:  5'- cUGAgcUGGUCcacgCCCUgcCCCCGguaaucugucUUGGAGUCCa -3'
miRNA:   3'- -ACU--ACUAG----GGGA--GGGGC----------AAUUUCAGG- -5'
3731 5' -51.1 NC_001650.1 + 67159 0.67 0.993723
Target:  5'- cGGUGAUCUCCcCgCCCGc----GUCCg -3'
miRNA:   3'- aCUACUAGGGGaG-GGGCaauuuCAGG- -5'
3731 5' -51.1 NC_001650.1 + 24988 0.67 0.992772
Target:  5'- cGG-GGcCCCCUCCCCG---GAGUgCCu -3'
miRNA:   3'- aCUaCUaGGGGAGGGGCaauUUCA-GG- -5'
3731 5' -51.1 NC_001650.1 + 160635 0.67 0.992772
Target:  5'- gGAUaGAgagCCCa-CCCCGUUGGAGaaggcUCCa -3'
miRNA:   3'- aCUA-CUa--GGGgaGGGGCAAUUUC-----AGG- -5'
3731 5' -51.1 NC_001650.1 + 167426 0.67 0.992772
Target:  5'- aGAggaGUCCCCUCCCaGUUAuugggaaauguuGAGcCCa -3'
miRNA:   3'- aCUac-UAGGGGAGGGgCAAU------------UUCaGG- -5'
3731 5' -51.1 NC_001650.1 + 719 0.67 0.992772
Target:  5'- aGAggaGUCCCCUCCCaGUUAuugggaaauguuGAGcCCa -3'
miRNA:   3'- aCUac-UAGGGGAGGGgCAAU------------UUCaGG- -5'
3731 5' -51.1 NC_001650.1 + 56732 0.67 0.991708
Target:  5'- cGgcGccCCCCUCCCCGgccccAucGUCCc -3'
miRNA:   3'- aCuaCuaGGGGAGGGGCaa---UuuCAGG- -5'
3731 5' -51.1 NC_001650.1 + 31063 0.67 0.990524
Target:  5'- -------aCCCUCCCCGcucGAGUCCc -3'
miRNA:   3'- acuacuagGGGAGGGGCaauUUCAGG- -5'
3731 5' -51.1 NC_001650.1 + 37512 0.67 0.990524
Target:  5'- aGGUGAacUCCCCgcgaccUCuCCCGUUgcugccGAAGUCa -3'
miRNA:   3'- aCUACU--AGGGG------AG-GGGCAA------UUUCAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.