miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3804 5' -57.7 NC_001650.1 + 51882 0.66 0.912534
Target:  5'- aCCGccuUGAGGgacugaAGGG-GUCCACCGc-GCCc -3'
miRNA:   3'- -GGC---ACUCC------UCCCaCAGGUGGUacCGG- -5'
3804 5' -57.7 NC_001650.1 + 26437 0.66 0.912534
Target:  5'- cCCGUgGAGGAGaacGUGggCACCcaGGCCa -3'
miRNA:   3'- -GGCA-CUCCUCc--CACagGUGGuaCCGG- -5'
3804 5' -57.7 NC_001650.1 + 172048 0.66 0.910808
Target:  5'- -gGUGGGGAGGcggccaucuugucuGUG-CCGCgGcGGCCa -3'
miRNA:   3'- ggCACUCCUCC--------------CACaGGUGgUaCCGG- -5'
3804 5' -57.7 NC_001650.1 + 5341 0.66 0.910808
Target:  5'- -gGUGGGGAGGcggccaucuugucuGUG-CCGCgGcGGCCa -3'
miRNA:   3'- ggCACUCCUCC--------------CACaGGUGgUaCCGG- -5'
3804 5' -57.7 NC_001650.1 + 126277 0.66 0.906705
Target:  5'- cCCGcccaGcuGAGGGUG-CCGCCcccGGCCg -3'
miRNA:   3'- -GGCa---CucCUCCCACaGGUGGua-CCGG- -5'
3804 5' -57.7 NC_001650.1 + 76739 0.66 0.906705
Target:  5'- cUCGUGcAGcAGGGUGgcgauggCCACCGcagaguccUGGCUg -3'
miRNA:   3'- -GGCAC-UCcUCCCACa------GGUGGU--------ACCGG- -5'
3804 5' -57.7 NC_001650.1 + 126488 0.66 0.906111
Target:  5'- uCCGUcgaggacGGGGAGGG-GUCuUAUgAUGGCa -3'
miRNA:   3'- -GGCA-------CUCCUCCCaCAG-GUGgUACCGg -5'
3804 5' -57.7 NC_001650.1 + 79121 0.66 0.904313
Target:  5'- gCGgGAGGAGGGccaGUCC-CCugagcguccucucUGGCCu -3'
miRNA:   3'- gGCaCUCCUCCCa--CAGGuGGu------------ACCGG- -5'
3804 5' -57.7 NC_001650.1 + 20679 0.66 0.900659
Target:  5'- aCGggGGGGAcGGGggGUCUgguGCCG-GGCCg -3'
miRNA:   3'- gGCa-CUCCU-CCCa-CAGG---UGGUaCCGG- -5'
3804 5' -57.7 NC_001650.1 + 21790 0.66 0.894396
Target:  5'- aCGccGGGGAGGGcGcCgGCCGaGGCCc -3'
miRNA:   3'- gGCa-CUCCUCCCaCaGgUGGUaCCGG- -5'
3804 5' -57.7 NC_001650.1 + 113154 0.66 0.894396
Target:  5'- ---cGAGGAGGGgauggccauccUGUUCugC-UGGCCc -3'
miRNA:   3'- ggcaCUCCUCCC-----------ACAGGugGuACCGG- -5'
3804 5' -57.7 NC_001650.1 + 47944 0.66 0.88792
Target:  5'- aCCGgGGGGAGGGuUGcCCGagaCA-GGCUg -3'
miRNA:   3'- -GGCaCUCCUCCC-ACaGGUg--GUaCCGG- -5'
3804 5' -57.7 NC_001650.1 + 119874 0.66 0.8866
Target:  5'- aCCGggcUGAaGAuGGUGUCCACCGaggugcacucggGGCCg -3'
miRNA:   3'- -GGC---ACUcCUcCCACAGGUGGUa-----------CCGG- -5'
3804 5' -57.7 NC_001650.1 + 160650 0.66 0.881234
Target:  5'- cCCGUu-GGAGaagGcUCCAUCAUGGCCu -3'
miRNA:   3'- -GGCAcuCCUCccaC-AGGUGGUACCGG- -5'
3804 5' -57.7 NC_001650.1 + 136327 0.66 0.877814
Target:  5'- aCGUGAGGAGGuagguggcgaagcaGgacagGUCCGCgCAgcgggugaugugGGCCa -3'
miRNA:   3'- gGCACUCCUCC--------------Ca----CAGGUG-GUa-----------CCGG- -5'
3804 5' -57.7 NC_001650.1 + 130084 0.67 0.874343
Target:  5'- gCCGggGAGGGGGGagagCCGCCc--GCCa -3'
miRNA:   3'- -GGCa-CUCCUCCCaca-GGUGGuacCGG- -5'
3804 5' -57.7 NC_001650.1 + 113229 0.67 0.872235
Target:  5'- gCUG-GAGGgcgucgcguuGGGGuUGUCCACCAgccuggacacaaacUGGUCg -3'
miRNA:   3'- -GGCaCUCC----------UCCC-ACAGGUGGU--------------ACCGG- -5'
3804 5' -57.7 NC_001650.1 + 131478 0.67 0.871529
Target:  5'- ---cGAGGGGGacaUGgucagggagaccgCCACCGUGGCCc -3'
miRNA:   3'- ggcaCUCCUCCc--ACa------------GGUGGUACCGG- -5'
3804 5' -57.7 NC_001650.1 + 18440 0.67 0.867249
Target:  5'- gUGUGuGGGGGGGUGUaggagaugucCCACa--GGCCc -3'
miRNA:   3'- gGCAC-UCCUCCCACA----------GGUGguaCCGG- -5'
3804 5' -57.7 NC_001650.1 + 20722 0.67 0.867249
Target:  5'- cCUGcUGAGGuuuGGGUacaCGCCAUgGGCCa -3'
miRNA:   3'- -GGC-ACUCCu--CCCAcagGUGGUA-CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.