miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3825 5' -65.6 NC_001650.1 + 105620 0.66 0.525977
Target:  5'- cGGCGCCCgCacaGCCuccaguuGCCGAGGUGGa- -3'
miRNA:   3'- -UCGCGGGgGa--CGGc------CGGCUCCGCUau -5'
3825 5' -65.6 NC_001650.1 + 110879 0.66 0.525977
Target:  5'- cGgGCCCCUaucGCCGccGCCGcGGCGAc- -3'
miRNA:   3'- uCgCGGGGGa--CGGC--CGGCuCCGCUau -5'
3825 5' -65.6 NC_001650.1 + 23345 0.66 0.525977
Target:  5'- uGGgGCCCCuggacCUGCCcguGGCCGAcuacucuauGGUGGUGg -3'
miRNA:   3'- -UCgCGGGG-----GACGG---CCGGCU---------CCGCUAU- -5'
3825 5' -65.6 NC_001650.1 + 143248 0.66 0.525977
Target:  5'- uGCGaCCCCCUGUgcgcccucaacuCGGCCucGGCGu-- -3'
miRNA:   3'- uCGC-GGGGGACG------------GCCGGcuCCGCuau -5'
3825 5' -65.6 NC_001650.1 + 133875 0.66 0.525977
Target:  5'- aGGgGUCCCCgggGCUcgaggaGGCCGGGGcCGGg- -3'
miRNA:   3'- -UCgCGGGGGa--CGG------CCGGCUCC-GCUau -5'
3825 5' -65.6 NC_001650.1 + 41173 0.66 0.51677
Target:  5'- cGGCGCCCUCcGCgUGGCCc--GCGAUAc -3'
miRNA:   3'- -UCGCGGGGGaCG-GCCGGcucCGCUAU- -5'
3825 5' -65.6 NC_001650.1 + 157484 0.66 0.51677
Target:  5'- cGGCGCacagCCCCU-CCaGGCCGGgcccGGCGAa- -3'
miRNA:   3'- -UCGCG----GGGGAcGG-CCGGCU----CCGCUau -5'
3825 5' -65.6 NC_001650.1 + 152931 0.66 0.51677
Target:  5'- aAGCGCCCCC-GUCGgGCUugaGGGGCu--- -3'
miRNA:   3'- -UCGCGGGGGaCGGC-CGG---CUCCGcuau -5'
3825 5' -65.6 NC_001650.1 + 130840 0.66 0.51677
Target:  5'- aGGCgGCCgCCCUGCUGcUCGAGGCc--- -3'
miRNA:   3'- -UCG-CGG-GGGACGGCcGGCUCCGcuau -5'
3825 5' -65.6 NC_001650.1 + 57478 0.66 0.51677
Target:  5'- uAGCccugGUCCCC-GgCGGCCG-GGUGAUAg -3'
miRNA:   3'- -UCG----CGGGGGaCgGCCGGCuCCGCUAU- -5'
3825 5' -65.6 NC_001650.1 + 77273 0.66 0.51677
Target:  5'- cGCGCCCCCcaggGCCG-CCaGGGaacaGAUGg -3'
miRNA:   3'- uCGCGGGGGa---CGGCcGGcUCCg---CUAU- -5'
3825 5' -65.6 NC_001650.1 + 157396 0.66 0.507628
Target:  5'- aGGUGCCCCagGUCGGCCaacucgaaGGGGCGc-- -3'
miRNA:   3'- -UCGCGGGGgaCGGCCGG--------CUCCGCuau -5'
3825 5' -65.6 NC_001650.1 + 121573 0.66 0.507628
Target:  5'- cGCGaCCCCCUGgaCC-GCgGGGGCGGc- -3'
miRNA:   3'- uCGC-GGGGGAC--GGcCGgCUCCGCUau -5'
3825 5' -65.6 NC_001650.1 + 153941 0.66 0.498555
Target:  5'- cGUGCCUCUUGCacgGGCCuucuagGGGGCGGg- -3'
miRNA:   3'- uCGCGGGGGACGg--CCGG------CUCCGCUau -5'
3825 5' -65.6 NC_001650.1 + 61681 0.66 0.498555
Target:  5'- aGGUGCCacuucugCCUcCCGGCUGGGGCGu-- -3'
miRNA:   3'- -UCGCGGg------GGAcGGCCGGCUCCGCuau -5'
3825 5' -65.6 NC_001650.1 + 63148 0.66 0.489555
Target:  5'- gGGCGCCCCCcGC--GCCGcGGCGu-- -3'
miRNA:   3'- -UCGCGGGGGaCGgcCGGCuCCGCuau -5'
3825 5' -65.6 NC_001650.1 + 106952 0.66 0.489555
Target:  5'- uGGCGgCCCUgggggGCgCGGUCaccacgGAGGCGAUGu -3'
miRNA:   3'- -UCGCgGGGGa----CG-GCCGG------CUCCGCUAU- -5'
3825 5' -65.6 NC_001650.1 + 83547 0.66 0.480633
Target:  5'- gGGCGCCCCguuucagGCUGGCCcuGGGCa--- -3'
miRNA:   3'- -UCGCGGGGga-----CGGCCGGc-UCCGcuau -5'
3825 5' -65.6 NC_001650.1 + 49177 0.66 0.480633
Target:  5'- uGGUGUCCgagggCCgcgcGCUGGCCGAgGGCGAg- -3'
miRNA:   3'- -UCGCGGG-----GGa---CGGCCGGCU-CCGCUau -5'
3825 5' -65.6 NC_001650.1 + 30522 0.66 0.471789
Target:  5'- uGCGCgUCCUGCUucGCgGAGGCGGc- -3'
miRNA:   3'- uCGCGgGGGACGGc-CGgCUCCGCUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.