miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3861 3' -56.1 NC_001650.1 + 121868 0.66 0.939516
Target:  5'- aGUUCUGCGaGGggcucaaccccGGCGACGcGGaCUAcGCg -3'
miRNA:   3'- aCAAGAUGC-CC-----------UCGCUGCaCC-GGU-CG- -5'
3861 3' -56.1 NC_001650.1 + 35277 0.66 0.934755
Target:  5'- gUGggCgggGCGGGccGGgGACGggcgcgGGCCAGg -3'
miRNA:   3'- -ACaaGa--UGCCC--UCgCUGCa-----CCGGUCg -5'
3861 3' -56.1 NC_001650.1 + 169462 0.66 0.929763
Target:  5'- -uUUCUggGCuGGGGUcGCGcGGCCAGCa -3'
miRNA:   3'- acAAGA--UGcCCUCGcUGCaCCGGUCG- -5'
3861 3' -56.1 NC_001650.1 + 2755 0.66 0.929763
Target:  5'- -uUUCUggGCuGGGGUcGCGcGGCCAGCa -3'
miRNA:   3'- acAAGA--UGcCCUCGcUGCaCCGGUCG- -5'
3861 3' -56.1 NC_001650.1 + 86231 0.66 0.929763
Target:  5'- aUGUUUga-GGaGGGCGACGaGGCCAc- -3'
miRNA:   3'- -ACAAGaugCC-CUCGCUGCaCCGGUcg -5'
3861 3' -56.1 NC_001650.1 + 127550 0.66 0.925072
Target:  5'- aGUUCgagggggaaggggcgAgGGGGGCGACcgcccagGGCCAGg -3'
miRNA:   3'- aCAAGa--------------UgCCCUCGCUGca-----CCGGUCg -5'
3861 3' -56.1 NC_001650.1 + 103831 0.66 0.919084
Target:  5'- cGUUCUgggGCGcGGAGaUGGCG-GGCuCGGUg -3'
miRNA:   3'- aCAAGA---UGC-CCUC-GCUGCaCCG-GUCG- -5'
3861 3' -56.1 NC_001650.1 + 70891 0.67 0.913398
Target:  5'- ---gCUACGcGAGCuACGUGGUCAGg -3'
miRNA:   3'- acaaGAUGCcCUCGcUGCACCGGUCg -5'
3861 3' -56.1 NC_001650.1 + 78103 0.67 0.913398
Target:  5'- gUGUgcgACGGGGGCGACGaGuGCaUAGUg -3'
miRNA:   3'- -ACAagaUGCCCUCGCUGCaC-CG-GUCG- -5'
3861 3' -56.1 NC_001650.1 + 136094 0.67 0.911647
Target:  5'- -----gGCGGGGGCGGCcuuguccagccccagGGUCAGCa -3'
miRNA:   3'- acaagaUGCCCUCGCUGca-------------CCGGUCG- -5'
3861 3' -56.1 NC_001650.1 + 102224 0.67 0.907482
Target:  5'- aGUUCUuucaGGGAGCcgccucccaccaGACGgcgcaGCCGGCg -3'
miRNA:   3'- aCAAGAug--CCCUCG------------CUGCac---CGGUCG- -5'
3861 3' -56.1 NC_001650.1 + 53250 0.67 0.905663
Target:  5'- aGcgCgagACGGGAGCGGgGUcacggggaggucgaGGCCGGg -3'
miRNA:   3'- aCaaGa--UGCCCUCGCUgCA--------------CCGGUCg -5'
3861 3' -56.1 NC_001650.1 + 67088 0.67 0.894969
Target:  5'- aGUaCcACGGGGGCGACGUcuCCAaGCu -3'
miRNA:   3'- aCAaGaUGCCCUCGCUGCAccGGU-CG- -5'
3861 3' -56.1 NC_001650.1 + 35886 0.67 0.894969
Target:  5'- aGUUUcACGcGGGGCgGGCGgacUGGCCGGg -3'
miRNA:   3'- aCAAGaUGC-CCUCG-CUGC---ACCGGUCg -5'
3861 3' -56.1 NC_001650.1 + 81429 0.67 0.894969
Target:  5'- cUGUUCcucaUGCuGGGAGgGA-GaGGCCGGCg -3'
miRNA:   3'- -ACAAG----AUG-CCCUCgCUgCaCCGGUCG- -5'
3861 3' -56.1 NC_001650.1 + 48046 0.67 0.888378
Target:  5'- cUGUUCUGCucgcugcugGGGGGCGcccugaACGUGGgCAuguGCg -3'
miRNA:   3'- -ACAAGAUG---------CCCUCGC------UGCACCgGU---CG- -5'
3861 3' -56.1 NC_001650.1 + 123095 0.67 0.888378
Target:  5'- ------cCGGGGGCGGCGggggaGGCgAGCu -3'
miRNA:   3'- acaagauGCCCUCGCUGCa----CCGgUCG- -5'
3861 3' -56.1 NC_001650.1 + 161362 0.67 0.881568
Target:  5'- cGUUCc-CGGGGGaGAaGUGGCuCAGCu -3'
miRNA:   3'- aCAAGauGCCCUCgCUgCACCG-GUCG- -5'
3861 3' -56.1 NC_001650.1 + 132692 0.68 0.874543
Target:  5'- aGUcccUCUGCGuGGccAGUGGCuG-GGCCAGCu -3'
miRNA:   3'- aCA---AGAUGC-CC--UCGCUG-CaCCGGUCG- -5'
3861 3' -56.1 NC_001650.1 + 28583 0.68 0.867308
Target:  5'- cGUUC-GCGGG-GCu-CGUGGUgAGCg -3'
miRNA:   3'- aCAAGaUGCCCuCGcuGCACCGgUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.