miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3902 3' -55.4 NC_001650.1 + 62021 0.66 0.957613
Target:  5'- cGcCGCGGuCCAGgccuCGUGGAAGUGGu -3'
miRNA:   3'- cCuGCGCCcGGUCgu--GCACUUUCACU- -5'
3902 3' -55.4 NC_001650.1 + 15047 0.66 0.957613
Target:  5'- aGGAagaugccaGCGGGCC-GCugGgggGGAAGgGAc -3'
miRNA:   3'- -CCUg-------CGCCCGGuCGugCa--CUUUCaCU- -5'
3902 3' -55.4 NC_001650.1 + 48173 0.66 0.957613
Target:  5'- cGGugGUGGggaGCCuGCugGUGAuAGcGGu -3'
miRNA:   3'- -CCugCGCC---CGGuCGugCACUuUCaCU- -5'
3902 3' -55.4 NC_001650.1 + 57898 0.66 0.957613
Target:  5'- aGGGCGCGGGauaguagcCCGgguGCACGggGAAGGg-- -3'
miRNA:   3'- -CCUGCGCCC--------GGU---CGUGCa-CUUUCacu -5'
3902 3' -55.4 NC_001650.1 + 181754 0.66 0.957613
Target:  5'- aGGAagaugccaGCGGGCC-GCugGgggGGAAGgGAc -3'
miRNA:   3'- -CCUg-------CGCCCGGuCGugCa--CUUUCaCU- -5'
3902 3' -55.4 NC_001650.1 + 27588 0.66 0.957613
Target:  5'- cGGACuacaGGGcCCAGCugGaGAGggcGGUGAu -3'
miRNA:   3'- -CCUGcg--CCC-GGUCGugCaCUU---UCACU- -5'
3902 3' -55.4 NC_001650.1 + 18006 0.66 0.953824
Target:  5'- gGGGCGCucuGCCAGUAUGggGAGAGacUGAg -3'
miRNA:   3'- -CCUGCGcc-CGGUCGUGCa-CUUUC--ACU- -5'
3902 3' -55.4 NC_001650.1 + 130052 0.66 0.953824
Target:  5'- gGGA-GCGGGCC--UACGUgcaGggGGUGGa -3'
miRNA:   3'- -CCUgCGCCCGGucGUGCA---CuuUCACU- -5'
3902 3' -55.4 NC_001650.1 + 159539 0.66 0.949813
Target:  5'- aGGGCGCuGGUgAGCGCGUccGAGgucuuGGUGu -3'
miRNA:   3'- -CCUGCGcCCGgUCGUGCA--CUU-----UCACu -5'
3902 3' -55.4 NC_001650.1 + 108581 0.66 0.936417
Target:  5'- cGGACagguacuggGCGGGCCAGUccagggACGUGcAGGg-- -3'
miRNA:   3'- -CCUG---------CGCCCGGUCG------UGCACuUUCacu -5'
3902 3' -55.4 NC_001650.1 + 29050 0.67 0.93149
Target:  5'- gGGGCGCGGGgggUGGCcgACGUGggGGa-- -3'
miRNA:   3'- -CCUGCGCCCg--GUCG--UGCACuuUCacu -5'
3902 3' -55.4 NC_001650.1 + 68202 0.67 0.93149
Target:  5'- uGGAUagGGGCCcucuuuagggaGGC-CGUGGAGGUGGa -3'
miRNA:   3'- -CCUGcgCCCGG-----------UCGuGCACUUUCACU- -5'
3902 3' -55.4 NC_001650.1 + 72719 0.67 0.93149
Target:  5'- -cACGagaGGGCCaAGCugGUGGGgcagacgcugcuGGUGAa -3'
miRNA:   3'- ccUGCg--CCCGG-UCGugCACUU------------UCACU- -5'
3902 3' -55.4 NC_001650.1 + 128584 0.67 0.930984
Target:  5'- cGGAC-UGGGCCcaccgccccgccgAGCcCGUGAcccAGGUGAa -3'
miRNA:   3'- -CCUGcGCCCGG-------------UCGuGCACU---UUCACU- -5'
3902 3' -55.4 NC_001650.1 + 111962 0.67 0.92633
Target:  5'- aGGACGCGGGCaugcuccugaGGgAgGUuAAGGUGGg -3'
miRNA:   3'- -CCUGCGCCCGg---------UCgUgCAcUUUCACU- -5'
3902 3' -55.4 NC_001650.1 + 89925 0.67 0.92633
Target:  5'- -uACuCGGGCUGGU-CGUGGGAGUGGg -3'
miRNA:   3'- ccUGcGCCCGGUCGuGCACUUUCACU- -5'
3902 3' -55.4 NC_001650.1 + 26903 0.67 0.920938
Target:  5'- aGGAgaggcuguacCGCGG-CCAGCugGUGguGGUaGAg -3'
miRNA:   3'- -CCU----------GCGCCcGGUCGugCACuuUCA-CU- -5'
3902 3' -55.4 NC_001650.1 + 135948 0.67 0.920938
Target:  5'- aGGugGgGGGCaGGCACGgacaGAGGGg-- -3'
miRNA:   3'- -CCugCgCCCGgUCGUGCa---CUUUCacu -5'
3902 3' -55.4 NC_001650.1 + 57860 0.67 0.909456
Target:  5'- aGGGCagguacUGGGCCuGCGCGUcaccuGggGGUGGu -3'
miRNA:   3'- -CCUGc-----GCCCGGuCGUGCA-----CuuUCACU- -5'
3902 3' -55.4 NC_001650.1 + 92006 0.67 0.909456
Target:  5'- gGGucuauCGCGGGCaaaGGauaacCGUGGAGGUGGu -3'
miRNA:   3'- -CCu----GCGCCCGg--UCgu---GCACUUUCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.