miRNA display CGI


Results 1 - 20 of 89 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3912 3' -56 NC_001650.1 + 167299 0.66 0.930761
Target:  5'- gGAGCcCCCAGUGacucaGUUAGGGUCAGc- -3'
miRNA:   3'- -CUUGuGGGUCGUg----CGGUCCCAGUUcu -5'
3912 3' -56 NC_001650.1 + 77815 0.66 0.930761
Target:  5'- uGGACGgCCuGCugGCCucccuGGG-CGAGGg -3'
miRNA:   3'- -CUUGUgGGuCGugCGGu----CCCaGUUCU- -5'
3912 3' -56 NC_001650.1 + 126741 0.66 0.930761
Target:  5'- --uCACCC-GC-CGCCGGGGacCAGGGc -3'
miRNA:   3'- cuuGUGGGuCGuGCGGUCCCa-GUUCU- -5'
3912 3' -56 NC_001650.1 + 75124 0.66 0.930761
Target:  5'- aGGACGCCCAGgACGCuCAGcacGUCGc-- -3'
miRNA:   3'- -CUUGUGGGUCgUGCG-GUCc--CAGUucu -5'
3912 3' -56 NC_001650.1 + 592 0.66 0.930761
Target:  5'- gGAGCcCCCAGUGacucaGUUAGGGUCAGc- -3'
miRNA:   3'- -CUUGuGGGUCGUg----CGGUCCCAGUUcu -5'
3912 3' -56 NC_001650.1 + 162183 0.66 0.925518
Target:  5'- --cCGCCUuggGGUggGCCAGGGcCGGGAc -3'
miRNA:   3'- cuuGUGGG---UCGugCGGUCCCaGUUCU- -5'
3912 3' -56 NC_001650.1 + 61925 0.66 0.925518
Target:  5'- cAGCugCUcGCGCGCCgcGGGGgcgugCAGGGa -3'
miRNA:   3'- cUUGugGGuCGUGCGG--UCCCa----GUUCU- -5'
3912 3' -56 NC_001650.1 + 91605 0.66 0.925518
Target:  5'- gGGGCuCCCGGUACGagagCGGGGccuUCAAGGc -3'
miRNA:   3'- -CUUGuGGGUCGUGCg---GUCCC---AGUUCU- -5'
3912 3' -56 NC_001650.1 + 53084 0.66 0.925518
Target:  5'- uGGACAgCCuGgGCGCCAGucUCAGGGg -3'
miRNA:   3'- -CUUGUgGGuCgUGCGGUCccAGUUCU- -5'
3912 3' -56 NC_001650.1 + 162072 0.66 0.920038
Target:  5'- ---aGCCCAGCAgGCCguugaaGGGGUUgcGGa -3'
miRNA:   3'- cuugUGGGUCGUgCGG------UCCCAGuuCU- -5'
3912 3' -56 NC_001650.1 + 48042 0.66 0.914322
Target:  5'- ----gUCCAuGCGgGUCGGGGUCGAGGc -3'
miRNA:   3'- cuuguGGGU-CGUgCGGUCCCAGUUCU- -5'
3912 3' -56 NC_001650.1 + 133174 0.66 0.914322
Target:  5'- --uCGCCUcGCGCaCCAGGGUCAc-- -3'
miRNA:   3'- cuuGUGGGuCGUGcGGUCCCAGUucu -5'
3912 3' -56 NC_001650.1 + 71632 0.66 0.90837
Target:  5'- uGGGCGCgCCGG-GCGCCAGGGguguggccuaCAGGGc -3'
miRNA:   3'- -CUUGUG-GGUCgUGCGGUCCCa---------GUUCU- -5'
3912 3' -56 NC_001650.1 + 72346 0.66 0.90837
Target:  5'- cGAGCACagguuCCAGCuggACGUgGGGGUCuuuAGGg -3'
miRNA:   3'- -CUUGUG-----GGUCG---UGCGgUCCCAGu--UCU- -5'
3912 3' -56 NC_001650.1 + 131459 0.66 0.90837
Target:  5'- uGGACGCCUAcCGCGCCAGcaGGaUCGGGu -3'
miRNA:   3'- -CUUGUGGGUcGUGCGGUC--CC-AGUUCu -5'
3912 3' -56 NC_001650.1 + 68308 0.66 0.90837
Target:  5'- ---gGCCCuGCAgGuCCAGGGUgGAGu -3'
miRNA:   3'- cuugUGGGuCGUgC-GGUCCCAgUUCu -5'
3912 3' -56 NC_001650.1 + 141993 0.66 0.902184
Target:  5'- ----uCCCGGgggaaccuCAUGCUGGGGUCGAGAg -3'
miRNA:   3'- cuuguGGGUC--------GUGCGGUCCCAGUUCU- -5'
3912 3' -56 NC_001650.1 + 173941 0.66 0.902184
Target:  5'- ---uGCCCAGCAa-CCGGGGUCu--- -3'
miRNA:   3'- cuugUGGGUCGUgcGGUCCCAGuucu -5'
3912 3' -56 NC_001650.1 + 7234 0.66 0.902184
Target:  5'- ---uGCCCAGCAa-CCGGGGUCu--- -3'
miRNA:   3'- cuugUGGGUCGUgcGGUCCCAGuucu -5'
3912 3' -56 NC_001650.1 + 125655 0.66 0.902184
Target:  5'- cGGACGCCCuGC---CCGGGGcCAAGGg -3'
miRNA:   3'- -CUUGUGGGuCGugcGGUCCCaGUUCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.