miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3912 5' -64.6 NC_001650.1 + 125556 0.66 0.578651
Target:  5'- -uCCCUcGGCGcaCGGcCGCCGCCCGa -3'
miRNA:   3'- cuGGGAcCCGUccGCCaGCGGUGGGU- -5'
3912 5' -64.6 NC_001650.1 + 63170 0.66 0.578651
Target:  5'- -uCCCcGGGCAGG-GcGUCGuCCACCa- -3'
miRNA:   3'- cuGGGaCCCGUCCgC-CAGC-GGUGGgu -5'
3912 5' -64.6 NC_001650.1 + 64891 0.66 0.578651
Target:  5'- uGACCCUGGGa--GCGGUCugcaugcuggGCUACUCc -3'
miRNA:   3'- -CUGGGACCCgucCGCCAG----------CGGUGGGu -5'
3912 5' -64.6 NC_001650.1 + 100478 0.66 0.577699
Target:  5'- uGACCCUcaGGacggcgaGCAGGCGcUCGCCuAUCCGc -3'
miRNA:   3'- -CUGGGA--CC-------CGUCCGCcAGCGG-UGGGU- -5'
3912 5' -64.6 NC_001650.1 + 116073 0.66 0.572945
Target:  5'- cGGCCCcGGGCuGGUGGcUCGCgUcuacagcgagaccgcGCCCAu -3'
miRNA:   3'- -CUGGGaCCCGuCCGCC-AGCG-G---------------UGGGU- -5'
3912 5' -64.6 NC_001650.1 + 73865 0.66 0.569148
Target:  5'- cACCaggCUGGGCGGaGCGccCGCCACCa- -3'
miRNA:   3'- cUGG---GACCCGUC-CGCcaGCGGUGGgu -5'
3912 5' -64.6 NC_001650.1 + 49932 0.66 0.569148
Target:  5'- uGGCCCUGgggggccuGGCGGGCGGggaaUCGUCcUCCu -3'
miRNA:   3'- -CUGGGAC--------CCGUCCGCC----AGCGGuGGGu -5'
3912 5' -64.6 NC_001650.1 + 159710 0.66 0.569148
Target:  5'- aGCC--GGGCAGGagcaGGacCGCCACCCu -3'
miRNA:   3'- cUGGgaCCCGUCCg---CCa-GCGGUGGGu -5'
3912 5' -64.6 NC_001650.1 + 95189 0.66 0.566305
Target:  5'- gGACCCUGaagaaggggaacccGGCaaagugGGGCGGgaagCGCgACCCc -3'
miRNA:   3'- -CUGGGAC--------------CCG------UCCGCCa---GCGgUGGGu -5'
3912 5' -64.6 NC_001650.1 + 106867 0.66 0.559684
Target:  5'- gGGCCC-GGGguGGaugacaGGUCuaucaucuccauGCCGCCCu -3'
miRNA:   3'- -CUGGGaCCCguCCg-----CCAG------------CGGUGGGu -5'
3912 5' -64.6 NC_001650.1 + 58181 0.66 0.559684
Target:  5'- uGCCgUGGGaGGGUcuUCGCCGCCCc -3'
miRNA:   3'- cUGGgACCCgUCCGccAGCGGUGGGu -5'
3912 5' -64.6 NC_001650.1 + 70930 0.66 0.55874
Target:  5'- cGGCCgUcagcuacGGGCGGGCcauGGUCGCCuucgaCCAg -3'
miRNA:   3'- -CUGGgA-------CCCGUCCG---CCAGCGGug---GGU- -5'
3912 5' -64.6 NC_001650.1 + 74458 0.66 0.550265
Target:  5'- aACCUUGGGcCAGGCcaccUCgGUCACCCAc -3'
miRNA:   3'- cUGGGACCC-GUCCGcc--AG-CGGUGGGU- -5'
3912 5' -64.6 NC_001650.1 + 22038 0.66 0.550265
Target:  5'- cGGCCCUGGcccaccccaAGGCGGacgcgcUCGCCaagcuGCCCGa -3'
miRNA:   3'- -CUGGGACCcg-------UCCGCC------AGCGG-----UGGGU- -5'
3912 5' -64.6 NC_001650.1 + 52804 0.66 0.532508
Target:  5'- gGGCCCgGGcGCAGGaCGGgcgcggcguucucggCGCCcuGCCCGc -3'
miRNA:   3'- -CUGGGaCC-CGUCC-GCCa--------------GCGG--UGGGU- -5'
3912 5' -64.6 NC_001650.1 + 100139 0.66 0.531579
Target:  5'- uGGCCaCUGuGGUguagcaggucAGGUGGUCGuCCACCa- -3'
miRNA:   3'- -CUGG-GAC-CCG----------UCCGCCAGC-GGUGGgu -5'
3912 5' -64.6 NC_001650.1 + 25953 0.66 0.531579
Target:  5'- -cCCCUGGGCauccAGGCcuccacGGcCGCCAgCCCc -3'
miRNA:   3'- cuGGGACCCG----UCCG------CCaGCGGU-GGGu -5'
3912 5' -64.6 NC_001650.1 + 137701 0.66 0.531579
Target:  5'- aGCCa-GGGCGccCGGUCGCCGCCg- -3'
miRNA:   3'- cUGGgaCCCGUccGCCAGCGGUGGgu -5'
3912 5' -64.6 NC_001650.1 + 22454 0.67 0.526017
Target:  5'- -cUCCUGGGCuucgugagggugauGGaCGGgagcgcggCGCCGCCCGg -3'
miRNA:   3'- cuGGGACCCGu-------------CC-GCCa-------GCGGUGGGU- -5'
3912 5' -64.6 NC_001650.1 + 110700 0.67 0.522322
Target:  5'- gGACCCagcGGGCAGGCcaGGcUGCCGCagCAg -3'
miRNA:   3'- -CUGGGa--CCCGUCCG--CCaGCGGUGg-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.