miRNA display CGI


Results 1 - 20 of 79 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3962 3' -54.4 NC_001650.1 + 14284 0.66 0.970487
Target:  5'- cCUGCccaCAUGGACCCCUGCccACAUgGAc -3'
miRNA:   3'- -GACGc--GUGCUUGGGGGUGu-UGUAgCU- -5'
3962 3' -54.4 NC_001650.1 + 180630 0.66 0.970487
Target:  5'- -gGCGCccccUGGACCCCCGgGAcCAUgGAg -3'
miRNA:   3'- gaCGCGu---GCUUGGGGGUgUU-GUAgCU- -5'
3962 3' -54.4 NC_001650.1 + 14252 0.66 0.970487
Target:  5'- cCUGCccaCAUGGACCCCUGCccACAUgGAc -3'
miRNA:   3'- -GACGc--GUGCUUGGGGGUGu-UGUAgCU- -5'
3962 3' -54.4 NC_001650.1 + 180959 0.66 0.970487
Target:  5'- cCUGCccaCAUGGACCCCUGCccACAUgGAc -3'
miRNA:   3'- -GACGc--GUGCUUGGGGGUGu-UGUAgCU- -5'
3962 3' -54.4 NC_001650.1 + 180991 0.66 0.970487
Target:  5'- cCUGCccaCAUGGACCCCUGCccACAUgGAc -3'
miRNA:   3'- -GACGc--GUGCUUGGGGGUGu-UGUAgCU- -5'
3962 3' -54.4 NC_001650.1 + 23181 0.66 0.967504
Target:  5'- -cGCGCccuccaGGGuCCCCUACAACAgcagCGAc -3'
miRNA:   3'- gaCGCGug----CUU-GGGGGUGUUGUa---GCU- -5'
3962 3' -54.4 NC_001650.1 + 116302 0.66 0.967504
Target:  5'- -aGCGCcuCGu-CCCCCACAAUcUCGc -3'
miRNA:   3'- gaCGCGu-GCuuGGGGGUGUUGuAGCu -5'
3962 3' -54.4 NC_001650.1 + 146725 0.66 0.967194
Target:  5'- uUGCGCACcaGGuccACCCCCuucaugaGCAGCcuGUCGGu -3'
miRNA:   3'- gACGCGUG--CU---UGGGGG-------UGUUG--UAGCU- -5'
3962 3' -54.4 NC_001650.1 + 123875 0.66 0.964313
Target:  5'- aCUGCGUGCccgGGAUCgCCaACAGCGUCGc -3'
miRNA:   3'- -GACGCGUG---CUUGGgGG-UGUUGUAGCu -5'
3962 3' -54.4 NC_001650.1 + 11624 0.66 0.964313
Target:  5'- aCUGCGCAagcgggugGGACCCUCugAACAc--- -3'
miRNA:   3'- -GACGCGUg-------CUUGGGGGugUUGUagcu -5'
3962 3' -54.4 NC_001650.1 + 178331 0.66 0.964313
Target:  5'- aCUGCGCAagcgggugGGACCCUCugAACAc--- -3'
miRNA:   3'- -GACGCGUg-------CUUGGGGGugUUGUagcu -5'
3962 3' -54.4 NC_001650.1 + 76205 0.66 0.964313
Target:  5'- -aGUGCAgGGGCgucuCCCUgggacGCAGCGUCGAu -3'
miRNA:   3'- gaCGCGUgCUUG----GGGG-----UGUUGUAGCU- -5'
3962 3' -54.4 NC_001650.1 + 37752 0.66 0.964313
Target:  5'- -gGCGCcCGGGCCgCCUAgGGCcgCGGg -3'
miRNA:   3'- gaCGCGuGCUUGG-GGGUgUUGuaGCU- -5'
3962 3' -54.4 NC_001650.1 + 58721 0.66 0.964313
Target:  5'- -gGCGCACuuucGCCCCCcgACcuGACAUCGc -3'
miRNA:   3'- gaCGCGUGcu--UGGGGG--UG--UUGUAGCu -5'
3962 3' -54.4 NC_001650.1 + 94862 0.66 0.964313
Target:  5'- -gGUGguCGAggACCCCCACGGguUCa- -3'
miRNA:   3'- gaCGCguGCU--UGGGGGUGUUguAGcu -5'
3962 3' -54.4 NC_001650.1 + 76643 0.66 0.963982
Target:  5'- -gGCGCGCGccuucucGGCCCCCAgGAUGUa-- -3'
miRNA:   3'- gaCGCGUGC-------UUGGGGGUgUUGUAgcu -5'
3962 3' -54.4 NC_001650.1 + 39516 0.66 0.963315
Target:  5'- uCUGCGCAUGucacgugauuucaaAACCCCgCAUGcCAUCGc -3'
miRNA:   3'- -GACGCGUGC--------------UUGGGG-GUGUuGUAGCu -5'
3962 3' -54.4 NC_001650.1 + 121492 0.66 0.960909
Target:  5'- cCUGCGC-CGcugcAGCCCCaC-CAGCAUCu- -3'
miRNA:   3'- -GACGCGuGC----UUGGGG-GuGUUGUAGcu -5'
3962 3' -54.4 NC_001650.1 + 73602 0.66 0.960909
Target:  5'- gUGCGUggucucguGCGAG-CCCUACAACGcCGAg -3'
miRNA:   3'- gACGCG--------UGCUUgGGGGUGUUGUaGCU- -5'
3962 3' -54.4 NC_001650.1 + 52017 0.66 0.960909
Target:  5'- -cGCGCAgCaGGCaCCCCACGGCcaccUCGAa -3'
miRNA:   3'- gaCGCGU-GcUUG-GGGGUGUUGu---AGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.