Results 1 - 20 of 378 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5108 | 3' | -70.9 | NC_001798.1 | + | 127907 | 0.66 | 0.315387 |
Target: 5'- gGCCCCagaGCCCCccacgugggcaACCcgacggcgggGCCCCgggcgaaaagGCCCGGCc -3' miRNA: 3'- -UGGGG---CGGGG-----------UGG----------CGGGG----------CGGGCCGu -5' |
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5108 | 3' | -70.9 | NC_001798.1 | + | 24270 | 0.66 | 0.315387 |
Target: 5'- uGCgCCGCgCCUACgCGCCCCuGC-UGGCGc -3' miRNA: 3'- -UGgGGCG-GGGUG-GCGGGG-CGgGCCGU- -5' |
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5108 | 3' | -70.9 | NC_001798.1 | + | 126563 | 0.66 | 0.315387 |
Target: 5'- aACCCCGCCCU-CCGCUacaCGaCCCuGGa- -3' miRNA: 3'- -UGGGGCGGGGuGGCGGg--GC-GGG-CCgu -5' |
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5108 | 3' | -70.9 | NC_001798.1 | + | 101 | 0.66 | 0.315387 |
Target: 5'- aGCCCCgcgcGCCCCcuuccCCGUCCCuccCCCGGa- -3' miRNA: 3'- -UGGGG----CGGGGu----GGCGGGGc--GGGCCgu -5' |
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5108 | 3' | -70.9 | NC_001798.1 | + | 123766 | 0.66 | 0.315387 |
Target: 5'- gACCCCGCUgCugUGCaCCCuaGCCuuCGGCc -3' miRNA: 3'- -UGGGGCGGgGugGCG-GGG--CGG--GCCGu -5' |
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5108 | 3' | -70.9 | NC_001798.1 | + | 147963 | 0.66 | 0.315387 |
Target: 5'- cACCCCcCCCCAacaaCCCCaaaggcgcguGCCCGGCc -3' miRNA: 3'- -UGGGGcGGGGUggc-GGGG----------CGGGCCGu -5' |
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5108 | 3' | -70.9 | NC_001798.1 | + | 149234 | 0.66 | 0.315387 |
Target: 5'- uCCCCGUggCCCGCgggggCGUCgCCGgCCGGCGc -3' miRNA: 3'- uGGGGCG--GGGUG-----GCGG-GGCgGGCCGU- -5' |
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5108 | 3' | -70.9 | NC_001798.1 | + | 154439 | 0.66 | 0.315387 |
Target: 5'- aGCCCCgcgcGCCCCcuuccCCGUCCCuccCCCGGa- -3' miRNA: 3'- -UGGGG----CGGGGu----GGCGGGGc--GGGCCgu -5' |
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5108 | 3' | -70.9 | NC_001798.1 | + | 86206 | 0.66 | 0.315387 |
Target: 5'- aGCCCCaGCCCCAgcCCGaCCUgGaCCUGGg- -3' miRNA: 3'- -UGGGG-CGGGGU--GGC-GGGgC-GGGCCgu -5' |
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5108 | 3' | -70.9 | NC_001798.1 | + | 80783 | 0.66 | 0.308884 |
Target: 5'- gACUCgCGCCCCggcgggccggacGCCGCCCUGCgCGaCGu -3' miRNA: 3'- -UGGG-GCGGGG------------UGGCGGGGCGgGCcGU- -5' |
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5108 | 3' | -70.9 | NC_001798.1 | + | 121967 | 0.66 | 0.308884 |
Target: 5'- cACCCgGUCCgCGCgCGCCCCaagcacgcgGCCucCGGCGu -3' miRNA: 3'- -UGGGgCGGG-GUG-GCGGGG---------CGG--GCCGU- -5' |
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5108 | 3' | -70.9 | NC_001798.1 | + | 22623 | 0.66 | 0.308884 |
Target: 5'- cACCCCcCCCCACUGCCgCC-CCUGa-- -3' miRNA: 3'- -UGGGGcGGGGUGGCGG-GGcGGGCcgu -5' |
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5108 | 3' | -70.9 | NC_001798.1 | + | 57595 | 0.66 | 0.308884 |
Target: 5'- cCCCCGCgggCCCACCGUUaucgugCGUCCGGgGg -3' miRNA: 3'- uGGGGCG---GGGUGGCGGg-----GCGGGCCgU- -5' |
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5108 | 3' | -70.9 | NC_001798.1 | + | 58013 | 0.66 | 0.308884 |
Target: 5'- cACCCCGa-CCGCCGgCUCGCCgccauccgCGGCc -3' miRNA: 3'- -UGGGGCggGGUGGCgGGGCGG--------GCCGu -5' |
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5108 | 3' | -70.9 | NC_001798.1 | + | 84894 | 0.66 | 0.308884 |
Target: 5'- gGCCgCGUCCC-CCGCgCCGUCUcGCGa -3' miRNA: 3'- -UGGgGCGGGGuGGCGgGGCGGGcCGU- -5' |
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5108 | 3' | -70.9 | NC_001798.1 | + | 116437 | 0.66 | 0.308884 |
Target: 5'- cGCCgCCGacgaCCgGCCGCaCCGgCCGGCc -3' miRNA: 3'- -UGG-GGCg---GGgUGGCGgGGCgGGCCGu -5' |
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5108 | 3' | -70.9 | NC_001798.1 | + | 5602 | 0.66 | 0.308239 |
Target: 5'- cGCCCCGUuggUCCGCgggcgGCUCCGCCCcaaagggGGCGg -3' miRNA: 3'- -UGGGGCG---GGGUGg----CGGGGCGGG-------CCGU- -5' |
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5108 | 3' | -70.9 | NC_001798.1 | + | 127792 | 0.66 | 0.306953 |
Target: 5'- gACCCCGauaguCCCCcgaaGCgGCCCCGaCCCaacagccuagaucuGGCGa -3' miRNA: 3'- -UGGGGC-----GGGG----UGgCGGGGC-GGG--------------CCGU- -5' |
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5108 | 3' | -70.9 | NC_001798.1 | + | 84435 | 0.66 | 0.302483 |
Target: 5'- uCCCCacCCCCGCCGCgCaGCgUGGCGg -3' miRNA: 3'- uGGGGc-GGGGUGGCGgGgCGgGCCGU- -5' |
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5108 | 3' | -70.9 | NC_001798.1 | + | 70531 | 0.66 | 0.302483 |
Target: 5'- gGCUCCGacacgaCCCACgCGCUggaggCCGCCgGGCu -3' miRNA: 3'- -UGGGGCg-----GGGUG-GCGG-----GGCGGgCCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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