Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5109 | 5' | -56.7 | NC_001798.1 | + | 71363 | 0.66 | 0.895472 |
Target: 5'- ---cGCGCACUgcacccaguacauauCGGCCCUGGagGGGUu -3' miRNA: 3'- caaaUGUGUGG---------------GCCGGGACUg-CCCAc -5' |
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5109 | 5' | -56.7 | NC_001798.1 | + | 81769 | 0.66 | 0.892838 |
Target: 5'- ---cGCGCGcCCCGGgCCUccgccccccccGAgGGGUGg -3' miRNA: 3'- caaaUGUGU-GGGCCgGGA-----------CUgCCCAC- -5' |
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5109 | 5' | -56.7 | NC_001798.1 | + | 75958 | 0.66 | 0.892838 |
Target: 5'- ---aGCGCGCCgGGcCCCUGACc-GUGa -3' miRNA: 3'- caaaUGUGUGGgCC-GGGACUGccCAC- -5' |
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5109 | 5' | -56.7 | NC_001798.1 | + | 72846 | 0.66 | 0.892838 |
Target: 5'- ---cACGCGCggcaCgGGCCCcGAgCGGGUGg -3' miRNA: 3'- caaaUGUGUG----GgCCGGGaCU-GCCCAC- -5' |
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5109 | 5' | -56.7 | NC_001798.1 | + | 22875 | 0.66 | 0.892838 |
Target: 5'- ---cGC-CGCgCGGCCCggguuCGGGUGg -3' miRNA: 3'- caaaUGuGUGgGCCGGGacu--GCCCAC- -5' |
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5109 | 5' | -56.7 | NC_001798.1 | + | 110275 | 0.66 | 0.892838 |
Target: 5'- ---gGCGCgACCuCGGCCUcGugGGGg- -3' miRNA: 3'- caaaUGUG-UGG-GCCGGGaCugCCCac -5' |
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5109 | 5' | -56.7 | NC_001798.1 | + | 18759 | 0.66 | 0.892838 |
Target: 5'- ---gACGCaaGCCCGGCUCUGugGaGUu -3' miRNA: 3'- caaaUGUG--UGGGCCGGGACugCcCAc -5' |
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5109 | 5' | -56.7 | NC_001798.1 | + | 117496 | 0.66 | 0.886097 |
Target: 5'- --cUGCGCAaCgCGGUCgUGGCGGGa- -3' miRNA: 3'- caaAUGUGU-GgGCCGGgACUGCCCac -5' |
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5109 | 5' | -56.7 | NC_001798.1 | + | 37531 | 0.66 | 0.886097 |
Target: 5'- ---gACACGCCCcaaGCCCcaggguggugUGGCGGGa- -3' miRNA: 3'- caaaUGUGUGGGc--CGGG----------ACUGCCCac -5' |
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5109 | 5' | -56.7 | NC_001798.1 | + | 76957 | 0.66 | 0.879133 |
Target: 5'- ---gGCGCugCgGGCggaCCUGugGGGg- -3' miRNA: 3'- caaaUGUGugGgCCG---GGACugCCCac -5' |
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5109 | 5' | -56.7 | NC_001798.1 | + | 102553 | 0.66 | 0.87195 |
Target: 5'- ----cCGCACgCGGUCagcGGCGGGUGg -3' miRNA: 3'- caaauGUGUGgGCCGGga-CUGCCCAC- -5' |
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5109 | 5' | -56.7 | NC_001798.1 | + | 19839 | 0.66 | 0.87195 |
Target: 5'- -gUUGCGCGacaCGcGCCCggGGCGGGUa -3' miRNA: 3'- caAAUGUGUgg-GC-CGGGa-CUGCCCAc -5' |
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5109 | 5' | -56.7 | NC_001798.1 | + | 74422 | 0.66 | 0.87122 |
Target: 5'- ---gAC-CGCCgCGGCCCUGcaccucuACGGGg- -3' miRNA: 3'- caaaUGuGUGG-GCCGGGAC-------UGCCCac -5' |
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5109 | 5' | -56.7 | NC_001798.1 | + | 71902 | 0.67 | 0.856952 |
Target: 5'- ----cCGCuuCCCGGCCCUGGaGGGc- -3' miRNA: 3'- caaauGUGu-GGGCCGGGACUgCCCac -5' |
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5109 | 5' | -56.7 | NC_001798.1 | + | 93858 | 0.67 | 0.856952 |
Target: 5'- --cUACGCcgccuuCUCGGCCCUgaagcgcgcgGACGGGUc -3' miRNA: 3'- caaAUGUGu-----GGGCCGGGA----------CUGCCCAc -5' |
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5109 | 5' | -56.7 | NC_001798.1 | + | 1414 | 0.67 | 0.849148 |
Target: 5'- ---gGCGCGCCCaGGCCCcagcgcgcgcaGGCGcGGUGc -3' miRNA: 3'- caaaUGUGUGGG-CCGGGa----------CUGC-CCAC- -5' |
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5109 | 5' | -56.7 | NC_001798.1 | + | 52437 | 0.67 | 0.849148 |
Target: 5'- --gUACGCGCUgcacaCGGCCCUGGCGa--- -3' miRNA: 3'- caaAUGUGUGG-----GCCGGGACUGCccac -5' |
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5109 | 5' | -56.7 | NC_001798.1 | + | 29476 | 0.67 | 0.849148 |
Target: 5'- ----gUACACCCGGuuggucCCCgggGACGGGg- -3' miRNA: 3'- caaauGUGUGGGCC------GGGa--CUGCCCac -5' |
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5109 | 5' | -56.7 | NC_001798.1 | + | 48181 | 0.67 | 0.848357 |
Target: 5'- ---cGCACGCCCGGCUggcggcgguacagCUGugGGa-- -3' miRNA: 3'- caaaUGUGUGGGCCGG-------------GACugCCcac -5' |
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5109 | 5' | -56.7 | NC_001798.1 | + | 99950 | 0.67 | 0.841149 |
Target: 5'- ----cCACGCCCGcGCCaCUG-CGGGa- -3' miRNA: 3'- caaauGUGUGGGC-CGG-GACuGCCCac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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