miRNA display CGI


Results 41 - 60 of 433 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5116 3' -66.1 NC_001798.1 + 145726 0.73 0.169714
Target:  5'- -cCCGgcCCCGGCC-CGCgCCCCGCCgCCa -3'
miRNA:   3'- caGGC--GGGCUGGuGUGgGGGGCGG-GG- -5'
5116 3' -66.1 NC_001798.1 + 145610 0.81 0.048707
Target:  5'- -gCCGCgaccCCGACCcCGCCCCaCCGCCCCg -3'
miRNA:   3'- caGGCG----GGCUGGuGUGGGG-GGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 145542 0.74 0.15964
Target:  5'- -cCCGCCCGGCCgcccgcgucgcgccgGCGCCCCCU-CCCg -3'
miRNA:   3'- caGGCGGGCUGG---------------UGUGGGGGGcGGGg -5'
5116 3' -66.1 NC_001798.1 + 145500 0.85 0.023966
Target:  5'- -cCCGCCCGGCCgccGCGCgCCCCCGCCCg -3'
miRNA:   3'- caGGCGGGCUGG---UGUG-GGGGGCGGGg -5'
5116 3' -66.1 NC_001798.1 + 145458 0.85 0.023966
Target:  5'- -cCCGCCCGGCCgccGCGCgCCCCCGCCCg -3'
miRNA:   3'- caGGCGGGCUGG---UGUG-GGGGGCGGGg -5'
5116 3' -66.1 NC_001798.1 + 145416 0.85 0.023966
Target:  5'- -cCCGCCCGGCCgccGCGCgCCCCCGCCCg -3'
miRNA:   3'- caGGCGGGCUGG---UGUG-GGGGGCGGGg -5'
5116 3' -66.1 NC_001798.1 + 145105 0.7 0.285758
Target:  5'- -gUUGCCUguGACC-CACCCCaCGCCCCc -3'
miRNA:   3'- caGGCGGG--CUGGuGUGGGGgGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 142529 1.09 0.000423
Target:  5'- cGUCCGCCCGACCACACCCCCCGCCCCc -3'
miRNA:   3'- -CAGGCGGGCUGGUGUGGGGGGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 140163 0.72 0.213914
Target:  5'- --aCGCCCuGuACCACACCCCCCaguacgcggGCCgCCu -3'
miRNA:   3'- cagGCGGG-C-UGGUGUGGGGGG---------CGG-GG- -5'
5116 3' -66.1 NC_001798.1 + 139965 0.68 0.398535
Target:  5'- --aCGCgCGAaacgaguuCCACGCCCUcaCCGCCCUa -3'
miRNA:   3'- cagGCGgGCU--------GGUGUGGGG--GGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 139404 0.69 0.329676
Target:  5'- gGUCCGCCCccacagcagcccggGGCCAgACCCgCCGUgCg -3'
miRNA:   3'- -CAGGCGGG--------------CUGGUgUGGGgGGCGgGg -5'
5116 3' -66.1 NC_001798.1 + 139313 0.67 0.447579
Target:  5'- -gCCGCCCcgcguCCGCAUCgCCgGCgCCCg -3'
miRNA:   3'- caGGCGGGcu---GGUGUGGgGGgCG-GGG- -5'
5116 3' -66.1 NC_001798.1 + 139172 0.69 0.345859
Target:  5'- -cUCGCUgGACCggacgacguuguACACCCCCUGaCCCUc -3'
miRNA:   3'- caGGCGGgCUGG------------UGUGGGGGGC-GGGG- -5'
5116 3' -66.1 NC_001798.1 + 138994 0.7 0.285758
Target:  5'- -cCCGCUCGGCCAC-CCCggcgauaUCGCCCUc -3'
miRNA:   3'- caGGCGGGCUGGUGuGGGg------GGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 137944 0.76 0.118677
Target:  5'- -gCCGCCCGguccGCCGCGCgcugCUCCCGCUCCa -3'
miRNA:   3'- caGGCGGGC----UGGUGUG----GGGGGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 137916 0.67 0.42263
Target:  5'- cUCCGCCgggCGGCC-CGCgCCUC-CCCCg -3'
miRNA:   3'- cAGGCGG---GCUGGuGUGgGGGGcGGGG- -5'
5116 3' -66.1 NC_001798.1 + 137240 0.66 0.508763
Target:  5'- --gCGCCUGGuuGCugauCCCCuCCGCCaCCu -3'
miRNA:   3'- cagGCGGGCUggUGu---GGGG-GGCGG-GG- -5'
5116 3' -66.1 NC_001798.1 + 135894 0.72 0.213914
Target:  5'- uUCUGaCCCccccaggcgaGGCCgACgACCCCCUGCCCCa -3'
miRNA:   3'- cAGGC-GGG----------CUGG-UG-UGGGGGGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 135584 0.69 0.324863
Target:  5'- --aCGCCCGcGCCuCGCCCCCU-CCCUg -3'
miRNA:   3'- cagGCGGGC-UGGuGUGGGGGGcGGGG- -5'
5116 3' -66.1 NC_001798.1 + 135057 0.66 0.508763
Target:  5'- --gCGgCCGGCC--GCCUCCUGCCCg -3'
miRNA:   3'- cagGCgGGCUGGugUGGGGGGCGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.