Results 41 - 60 of 175 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5117 | 5' | -62 | NC_001798.1 | + | 113634 | 0.67 | 0.593682 |
Target: 5'- uGCGCgGCCGG-CGCcGCcAUguGGGUGGc -3' miRNA: 3'- gCGCGaCGGCCuGCGcCG-UG--UCCACC- -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 113307 | 0.67 | 0.592712 |
Target: 5'- cCGCuGgaGCUGGugGCcgcgGGCauguauuACGGGUGGa -3' miRNA: 3'- -GCG-CgaCGGCCugCG----CCG-------UGUCCACC- -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 111807 | 0.7 | 0.457558 |
Target: 5'- cCGUGC-GCCGGuCGCgggcguccaggggcuGGCGCGGGgcgGGa -3' miRNA: 3'- -GCGCGaCGGCCuGCG---------------CCGUGUCCa--CC- -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 102741 | 0.66 | 0.661819 |
Target: 5'- aCGCGCa--CGGACggcgaccuGCGGCGCGGGa-- -3' miRNA: 3'- -GCGCGacgGCCUG--------CGCCGUGUCCacc -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 102539 | 0.7 | 0.428205 |
Target: 5'- -cCGCgGCCGGcaggccgcACGCGGUcagcgGCGGGUGGc -3' miRNA: 3'- gcGCGaCGGCC--------UGCGCCG-----UGUCCACC- -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 102211 | 0.72 | 0.348745 |
Target: 5'- gCGCGCcgggagucGaCCGGGCGCGGCuCGGGgcgGGc -3' miRNA: 3'- -GCGCGa-------C-GGCCUGCGCCGuGUCCa--CC- -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 99236 | 0.67 | 0.603391 |
Target: 5'- aCGCGCacgaGCCGGGgGUGGCACAc---- -3' miRNA: 3'- -GCGCGa---CGGCCUgCGCCGUGUccacc -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 98554 | 0.72 | 0.327048 |
Target: 5'- gCGCGCUGgUcGugGgGGCGCuGGUGGc -3' miRNA: 3'- -GCGCGACgGcCugCgCCGUGuCCACC- -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 97453 | 0.72 | 0.327048 |
Target: 5'- uGCGCcgcgUGCUGG-CGCGGCugGGGgccGGc -3' miRNA: 3'- gCGCG----ACGGCCuGCGCCGugUCCa--CC- -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 96968 | 0.7 | 0.419785 |
Target: 5'- gGCGCUgGCgCGGAcCGCGGCgggcgGCGGGgccaGGg -3' miRNA: 3'- gCGCGA-CG-GCCU-GCGCCG-----UGUCCa---CC- -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 96680 | 0.66 | 0.675397 |
Target: 5'- cCGCGCUggaGCgcguccgggaguuuaUGGugGCGGCGguGG-GGu -3' miRNA: 3'- -GCGCGA---CG---------------GCCugCGCCGUguCCaCC- -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 96344 | 0.67 | 0.632607 |
Target: 5'- gCGUGCUGCgGcGGCaccuGCGGC-CGGGgcUGGa -3' miRNA: 3'- -GCGCGACGgC-CUG----CGCCGuGUCC--ACC- -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 94991 | 0.67 | 0.632607 |
Target: 5'- gGCgGCcGCCuGGGCcccgcaggGCGGCGCGGGccUGGa -3' miRNA: 3'- gCG-CGaCGG-CCUG--------CGCCGUGUCC--ACC- -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 91615 | 0.67 | 0.62286 |
Target: 5'- cCGCGCUuaUGGGCGgcCGGCcgccCGGGUGa -3' miRNA: 3'- -GCGCGAcgGCCUGC--GCCGu---GUCCACc -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 91083 | 0.71 | 0.379238 |
Target: 5'- gGCGC-GCCGGAgGCGGC-CGucGUGGa -3' miRNA: 3'- gCGCGaCGGCCUgCGCCGuGUc-CACC- -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 90413 | 0.67 | 0.602419 |
Target: 5'- gGCGCguucccgcgGCCGGGCuugagGCGGUACcagccgaAGGUGa -3' miRNA: 3'- gCGCGa--------CGGCCUG-----CGCCGUG-------UCCACc -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 89676 | 0.68 | 0.574347 |
Target: 5'- cCGCGCUGCgCGGGCccggaGGCGuagUAGGcGGg -3' miRNA: 3'- -GCGCGACG-GCCUGcg---CCGU---GUCCaCC- -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 88235 | 0.67 | 0.613119 |
Target: 5'- gGCGCuUGuuGGuguACGC-GCGCGGGUGu -3' miRNA: 3'- gCGCG-ACggCC---UGCGcCGUGUCCACc -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 86934 | 0.66 | 0.690835 |
Target: 5'- aGC-CUGCCGucgcACGC-GCGCAGGcUGGa -3' miRNA: 3'- gCGcGACGGCc---UGCGcCGUGUCC-ACC- -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 86251 | 0.66 | 0.661819 |
Target: 5'- cCGUGCUgaagcacgGCCGGggGCGCGGgCGCAccGGcGGg -3' miRNA: 3'- -GCGCGA--------CGGCC--UGCGCC-GUGU--CCaCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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